Difference between revisions of "RXN-17105"

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(Created page with "Category:reaction == Reaction KETOISOCAPROATE-RXN == * direction: ** left-to-right * common-name: ** 4-methyl-2-oxopentanoate dehydrogenase (lipoamide) * ec-number: ** [ht...")
(Created page with "Category:reaction == Reaction RXN-9633 == * direction: ** left-to-right * common-name: ** 3-oxo-stearoyl-[acyl-carrier protein] reductase ** (r)-3-hydroxystearoyl-[acp] re...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction KETOISOCAPROATE-RXN ==
+
== Reaction RXN-9633 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
** 4-methyl-2-oxopentanoate dehydrogenase (lipoamide)
+
** 3-oxo-stearoyl-[acyl-carrier protein] reductase
 +
** (r)-3-hydroxystearoyl-[acp] reductase
 +
** 3-oxoacyl-[acyl-carrier-protein] reductase (nadph)
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/1.2.4.4 ec-1.2.4.4]
+
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/1.1.1.100 ec-1.1.1.100]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[2K-4CH3-PENTANOATE]][c] '''+''' 1 [[BCAA-dehydrogenase-lipoyl]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[BCAA-dehydrogenase-3MB-DH-lipoyl]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
* 1 [[3-oxo-stearoyl-ACPs]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[R-3-hydroxystearoyl-ACPs]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ11017]]
+
* Gene: [[SJ04229]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[SJ18449]]
+
* Gene: [[SJ17743]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ13014]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5989]], stearate biosynthesis II (bacteria and plants):
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY3O-355]], stearate biosynthesis III (fungi):
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR122911
* UNIPROT:
 
** [http://www.uniprot.org/uniprot/P21839 P21839]
 
** [http://www.uniprot.org/uniprot/P21953 P21953]
 
** [http://www.uniprot.org/uniprot/P37940 P37940]
 
** [http://www.uniprot.org/uniprot/Q9PK54 Q9PK54]
 
** [http://www.uniprot.org/uniprot/P37941 P37941]
 
** [http://www.uniprot.org/uniprot/P11178 P11178]
 
** [http://www.uniprot.org/uniprot/P12694 P12694]
 
** [http://www.uniprot.org/uniprot/P09061 P09061]
 
** [http://www.uniprot.org/uniprot/P09060 P09060]
 
** [http://www.uniprot.org/uniprot/P11960 P11960]
 
** [http://www.uniprot.org/uniprot/O84344 O84344]
 
** [http://www.uniprot.org/uniprot/Q9Z9E8 Q9Z9E8]
 
** [http://www.uniprot.org/uniprot/Q9I1M2 Q9I1M2]
 
** [http://www.uniprot.org/uniprot/P35738 P35738]
 
** [http://www.uniprot.org/uniprot/P50136 P50136]
 
** [http://www.uniprot.org/uniprot/O48615 O48615]
 
** [http://www.uniprot.org/uniprot/O03849 O03849]
 
** [http://www.uniprot.org/uniprot/Q53592 Q53592]
 
** [http://www.uniprot.org/uniprot/Q53593 Q53593]
 
** [http://www.uniprot.org/uniprot/O82450 O82450]
 
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=4-methyl-2-oxopentanoate dehydrogenase (lipoamide)}}
+
{{#set: common-name=3-oxo-stearoyl-[acyl-carrier protein] reductase|3-oxoacyl-[acyl-carrier-protein] reductase (nadph)|(r)-3-hydroxystearoyl-[acp] reductase}}
{{#set: ec-number=ec-1.2.4.4}}
+
{{#set: ec-number=ec-2.3.1.86|ec-1.1.1.100}}
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=3}}
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=2}}
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:37, 15 March 2021

Reaction RXN-9633

  • direction:
    • left-to-right
  • common-name:
    • 3-oxo-stearoyl-[acyl-carrier protein] reductase
    • (r)-3-hydroxystearoyl-[acp] reductase
    • 3-oxoacyl-[acyl-carrier-protein] reductase (nadph)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5989, stearate biosynthesis II (bacteria and plants):
    • 6 reactions found over 6 reactions in the full pathway
  • PWY3O-355, stearate biosynthesis III (fungi):
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR122911
  • Property "Common-name" (as page type) with input value "3-oxo-stearoyl-[acyl-carrier protein] reductase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Common-name" (as page type) with input value "3-oxoacyl-[acyl-carrier-protein] reductase (nadph)" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Common-name" (as page type) with input value "(r)-3-hydroxystearoyl-[acp] reductase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.