Difference between revisions of "RXN-17113"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5290 PWY-5290] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-24966 tax-2...")
(Created page with "Category:reaction == Reaction RXN-13602 == * direction: ** left-to-right * common-name: ** linustatin β-diglucosidase ** beta-glucosidase ** linustatinase (β-dig...")
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5290 PWY-5290] ==
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== Reaction RXN-13602 ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-24966 tax-24966]
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** left-to-right
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-26468 tax-26468]
 
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-4056 tax-4056]
 
 
* common-name:
 
* common-name:
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** secologanin and strictosidine biosynthesis
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** linustatin β-diglucosidase
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== Reaction(s) found ==
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** beta-glucosidase
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* [[AROMATIC-L-AMINO-ACID-DECARBOXYLASE-RXN]]
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** linustatinase (β-diglucosidase)
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* [[STRICTOSIDINE-SYNTHASE-RXN]]
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* ec-number:
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== Reaction(s) not found ==
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** [http://enzyme.expasy.org/EC/3.2.1.21 ec-3.2.1.21]
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* [http://metacyc.org/META/NEW-IMAGE?object=1.3.3.9-RXN 1.3.3.9-RXN]
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== Reaction formula ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15237 RXN-15237]
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* 1 [[CPD-14594]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Glucopyranose]][c] '''+''' 1 [[LINAMARIN]][c]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9371 RXN-9371]
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== Gene(s) associated with this reaction  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9368 RXN-9368]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9369 RXN-9369]
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* Gene: [[SJ05533]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8197 RXN-8197]
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-19644 RXN-19644]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-14013 RXN-14013]
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* Gene: [[SJ04558]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9370 RXN-9370]
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8618 RXN-8618]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9367 RXN-9367]
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* Gene: [[SJ04559]]
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* [http://metacyc.org/META/NEW-IMAGE?object=LOGANATE-O-METHYLTRANSFERASE-RXN LOGANATE-O-METHYLTRANSFERASE-RXN]
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** Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9372 RXN-9372]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-4521 RXN-4521]
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* Gene: [[SJ19930]]
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{{#set: taxonomic-range=tax-4056|tax-24966|tax-26468}}
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** Category: [[annotation]]
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{{#set: common-name=secologanin and strictosidine biosynthesis}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: nb reaction found=2}}
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** Category: [[orthology]]
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{{#set: completion rate=0.12}}
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: nb total reaction=16}}
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* Gene: [[SJ05257]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ17199]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ05782]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ14973]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ05741]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ05740]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ18897]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ16402]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ18318]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ05532]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ11958]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* Gene: [[SJ00855]]
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** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ14193]]
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** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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</div>
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== Pathway(s)  ==
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* [[PWY-7091]], linustatin bioactivation:
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** '''2''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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== External links  ==
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{{#set: direction=left-to-right}}
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{{#set: common-name=beta-glucosidase|linustatin &beta;-diglucosidase|linustatinase (&beta;-diglucosidase)}}
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{{#set: ec-number=ec-3.2.1.21}}
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{{#set: nb gene associated=17}}
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{{#set: nb pathway associated=1}}
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{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 20:42, 18 December 2020

Reaction RXN-13602

  • direction:
    • left-to-right
  • common-name:
    • linustatin β-diglucosidase
    • beta-glucosidase
    • linustatinase (β-diglucosidase)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7091, linustatin bioactivation:
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-17113&oldid=50439"