Difference between revisions of "RXN-17121"

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(Created page with "Category:reaction == Reaction RXN66-318 == * direction: ** left-to-right * common-name: ** 4α-carboxy-5α-cholesta-8,24-dien-3β-ol:nad(p)+ 3-dehydrogenase...")
(Created page with "Category:reaction == Reaction GAPOXNPHOSPHN-RXN == * direction: ** reversible * common-name: ** glyceraldehyde 3-phosphate dehydrogenase * ec-number: ** [http://enzyme.exp...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN66-318 ==
+
== Reaction GAPOXNPHOSPHN-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** 4α-carboxy-5α-cholesta-8,24-dien-3β-ol:nad(p)+ 3-dehydrogenase (decarboxylating)
+
** glyceraldehyde 3-phosphate dehydrogenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.170 ec-1.1.1.170]
+
** [http://enzyme.expasy.org/EC/1.2.1.12 ec-1.2.1.12]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-4702]][c] '''+''' 1 [[NAD-P-OR-NOP]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-4581]][c] '''+''' 1 [[NADH-P-OR-NOP]][c]
+
* 1 [[GAP]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[Pi]][c] '''<=>''' 1 [[DPG]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ04782]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ05204]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ07665]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ00348]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ05251]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ14154]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6074]], zymosterol biosynthesis:
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''6''' reactions found over '''14''' reactions in the full pathway
+
* [[GLUCONEO-PWY]], gluconeogenesis I:
−
* [[PWY66-4]], cholesterol biosynthesis III (via desmosterol):
+
** '''12''' reactions found over '''13''' reactions in the full pathway
−
** '''14''' reactions found over '''4''' reactions in the full pathway
+
* [[P124-PWY]], Bifidobacterium shunt:
−
* [[PWY66-341]], cholesterol biosynthesis I:
+
** '''12''' reactions found over '''15''' reactions in the full pathway
−
** '''14''' reactions found over '''18''' reactions in the full pathway
+
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[P122-PWY]], heterolactic fermentation:
 +
** '''16''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate):
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-1042]], glycolysis IV (plant cytosol):
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate):
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose):
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis):
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY66-399]], gluconeogenesis III:
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-6901]], superpathway of glucose and xylose degradation:
 +
** '''10''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7003]], glycerol degradation to butanol:
 +
** '''8''' reactions found over '''6''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
{{#set: common-name=4&alpha;-carboxy-5&alpha;-cholesta-8,24-dien-3&beta;-ol:nad(p)+ 3-dehydrogenase (decarboxylating)}}
+
* RHEA:
−
{{#set: ec-number=ec-1.1.1.170}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10303 10303]
−
{{#set: nb gene associated=1}}
+
* LIGAND-RXN:
−
{{#set: nb pathway associated=3}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01061 R01061]
−
{{#set: reconstruction category=annotation}}
+
* UNIPROT:
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/P07486 P07486]
 +
** [http://www.uniprot.org/uniprot/P08477 P08477]
 +
** [http://www.uniprot.org/uniprot/P17878 P17878]
 +
** [http://www.uniprot.org/uniprot/Q01651 Q01651]
 +
** [http://www.uniprot.org/uniprot/Q27890 Q27890]
 +
** [http://www.uniprot.org/uniprot/Q27820 Q27820]
 +
** [http://www.uniprot.org/uniprot/Q7M188 Q7M188]
 +
** [http://www.uniprot.org/uniprot/Q7LZR1 Q7LZR1]
 +
** [http://www.uniprot.org/uniprot/Q58546 Q58546]
 +
** [http://www.uniprot.org/uniprot/P55971 P55971]
 +
** [http://www.uniprot.org/uniprot/P46795 P46795]
 +
** [http://www.uniprot.org/uniprot/P07487 P07487]
 +
** [http://www.uniprot.org/uniprot/Q01558 Q01558]
 +
** [http://www.uniprot.org/uniprot/Q7M187 Q7M187]
 +
** [http://www.uniprot.org/uniprot/O25902 O25902]
 +
** [http://www.uniprot.org/uniprot/Q9JWT8 Q9JWT8]
 +
** [http://www.uniprot.org/uniprot/P29272 P29272]
 +
** [http://www.uniprot.org/uniprot/P47543 P47543]
 +
** [http://www.uniprot.org/uniprot/O83816 O83816]
 +
** [http://www.uniprot.org/uniprot/P20445 P20445]
 +
** [http://www.uniprot.org/uniprot/P26517 P26517]
 +
** [http://www.uniprot.org/uniprot/P09124 P09124]
 +
** [http://www.uniprot.org/uniprot/P00362 P00362]
 +
** [http://www.uniprot.org/uniprot/P00358 P00358]
 +
** [http://www.uniprot.org/uniprot/P00359 P00359]
 +
** [http://www.uniprot.org/uniprot/P00360 P00360]
 +
** [http://www.uniprot.org/uniprot/P00356 P00356]
 +
** [http://www.uniprot.org/uniprot/P0A9B2 P0A9B2]
 +
** [http://www.uniprot.org/uniprot/P0A9B6 P0A9B6]
 +
** [http://www.uniprot.org/uniprot/P17721 P17721]
 +
** [http://www.uniprot.org/uniprot/P04406 P04406]
 +
** [http://www.uniprot.org/uniprot/P17244 P17244]
 +
** [http://www.uniprot.org/uniprot/P04796 P04796]
 +
** [http://www.uniprot.org/uniprot/P19089 P19089]
 +
** [http://www.uniprot.org/uniprot/P26518 P26518]
 +
** [http://www.uniprot.org/uniprot/P26988 P26988]
 +
** [http://www.uniprot.org/uniprot/P04970 P04970]
 +
** [http://www.uniprot.org/uniprot/P17329 P17329]
 +
** [http://www.uniprot.org/uniprot/P17330 P17330]
 +
** [http://www.uniprot.org/uniprot/P17331 P17331]
 +
** [http://www.uniprot.org/uniprot/P08439 P08439]
 +
** [http://www.uniprot.org/uniprot/P00357 P00357]
 +
** [http://www.uniprot.org/uniprot/P16858 P16858]
 +
** [http://www.uniprot.org/uniprot/P26521 P26521]
 +
** [http://www.uniprot.org/uniprot/P26520 P26520]
 +
** [http://www.uniprot.org/uniprot/P26519 P26519]
 +
** [http://www.uniprot.org/uniprot/P04797 P04797]
 +
** [http://www.uniprot.org/uniprot/P25861 P25861]
 +
** [http://www.uniprot.org/uniprot/P00361 P00361]
 +
** [http://www.uniprot.org/uniprot/P09317 P09317]
 +
** [http://www.uniprot.org/uniprot/P22512 P22512]
 +
** [http://www.uniprot.org/uniprot/P22513 P22513]
 +
** [http://www.uniprot.org/uniprot/P10097 P10097]
 +
** [http://www.uniprot.org/uniprot/P17819 P17819]
 +
** [http://www.uniprot.org/uniprot/P28844 P28844]
 +
** [http://www.uniprot.org/uniprot/P08735 P08735]
 +
** [http://www.uniprot.org/uniprot/P09316 P09316]
 +
** [http://www.uniprot.org/uniprot/Q9JX51 Q9JX51]
 +
** [http://www.uniprot.org/uniprot/O67161 O67161]
 +
** [http://www.uniprot.org/uniprot/P44304 P44304]
 +
** [http://www.uniprot.org/uniprot/O34425 O34425]
 +
** [http://www.uniprot.org/uniprot/P64178 P64178]
 +
** [http://www.uniprot.org/uniprot/Q46450 Q46450]
 +
** [http://www.uniprot.org/uniprot/P50321 P50321]
 +
** [http://www.uniprot.org/uniprot/P50322 P50322]
 +
** [http://www.uniprot.org/uniprot/P34917 P34917]
 +
** [http://www.uniprot.org/uniprot/P34918 P34918]
 +
** [http://www.uniprot.org/uniprot/Q07234 Q07234]
 +
** [http://www.uniprot.org/uniprot/P24748 P24748]
 +
** [http://www.uniprot.org/uniprot/P24746 P24746]
 +
** [http://www.uniprot.org/uniprot/P24749 P24749]
 +
** [http://www.uniprot.org/uniprot/P24751 P24751]
 +
** [http://www.uniprot.org/uniprot/P24750 P24750]
 +
** [http://www.uniprot.org/uniprot/Q60143 Q60143]
 +
** [http://www.uniprot.org/uniprot/Q64467 Q64467]
 +
** [http://www.uniprot.org/uniprot/P46406 P46406]
 +
** [http://www.uniprot.org/uniprot/Q59800 Q59800]
 +
** [http://www.uniprot.org/uniprot/P80534 P80534]
 +
** [http://www.uniprot.org/uniprot/Q9UW96 Q9UW96]
 +
** [http://www.uniprot.org/uniprot/P32809 P32809]
 +
** [http://www.uniprot.org/uniprot/P32810 P32810]
 +
** [http://www.uniprot.org/uniprot/P20287 P20287]
 +
** [http://www.uniprot.org/uniprot/P35143 P35143]
 +
** [http://www.uniprot.org/uniprot/P25858 P25858]
 +
** [http://www.uniprot.org/uniprot/P10618 P10618]
 +
** [http://www.uniprot.org/uniprot/Q7M517 Q7M517]
 +
** [http://www.uniprot.org/uniprot/Q7M516 Q7M516]
 +
** [http://www.uniprot.org/uniprot/Q09054 Q09054]
 +
** [http://www.uniprot.org/uniprot/Q43247 Q43247]
 +
** [http://www.uniprot.org/uniprot/P23722 P23722]
 +
** [http://www.uniprot.org/uniprot/P17729 P17729]
 +
** [http://www.uniprot.org/uniprot/Q01597 Q01597]
 +
** [http://www.uniprot.org/uniprot/P32637 P32637]
 +
** [http://www.uniprot.org/uniprot/P29497 P29497]
 +
** [http://www.uniprot.org/uniprot/P32638 P32638]
 +
** [http://www.uniprot.org/uniprot/P32635 P32635]
 +
** [http://www.uniprot.org/uniprot/P32636 P32636]
 +
** [http://www.uniprot.org/uniprot/Q59309 Q59309]
 +
** [http://www.uniprot.org/uniprot/P34783 P34783]
 +
** [http://www.uniprot.org/uniprot/Q00584 Q00584]
 +
** [http://www.uniprot.org/uniprot/Q42671 Q42671]
 +
** [http://www.uniprot.org/uniprot/P34920 P34920]
 +
** [http://www.uniprot.org/uniprot/P39460 P39460]
 +
** [http://www.uniprot.org/uniprot/Q37265 Q37265]
 +
** [http://www.uniprot.org/uniprot/Q37264 Q37264]
 +
** [http://www.uniprot.org/uniprot/Q01077 Q01077]
 +
** [http://www.uniprot.org/uniprot/P54270 P54270]
 +
** [http://www.uniprot.org/uniprot/Q48335 Q48335]
 +
** [http://www.uniprot.org/uniprot/Q43833 Q43833]
 +
** [http://www.uniprot.org/uniprot/Q59906 Q59906]
 +
** [http://www.uniprot.org/uniprot/P46713 P46713]
 +
** [http://www.uniprot.org/uniprot/P75358 P75358]
 +
** [http://www.uniprot.org/uniprot/Q7M2K2 Q7M2K2]
 +
** [http://www.uniprot.org/uniprot/Q43359 Q43359]
 +
** [http://www.uniprot.org/uniprot/O68075 O68075]
 +
** [http://www.uniprot.org/uniprot/Q08060 Q08060]
 +
** [http://www.uniprot.org/uniprot/O49222 O49222]
 +
** [http://www.uniprot.org/uniprot/P34922 P34922]
 +
** [http://www.uniprot.org/uniprot/O04106 O04106]
 +
** [http://www.uniprot.org/uniprot/P49644 P49644]
 +
** [http://www.uniprot.org/uniprot/O32755 O32755]
 +
** [http://www.uniprot.org/uniprot/P34924 P34924]
 +
** [http://www.uniprot.org/uniprot/O59841 O59841]
 +
** [http://www.uniprot.org/uniprot/P78958 P78958]
 +
** [http://www.uniprot.org/uniprot/P54118 P54118]
 +
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=glyceraldehyde 3-phosphate dehydrogenase}}
 +
{{#set: ec-number=ec-1.2.1.12}}
 +
{{#set: nb gene associated=5}}
 +
{{#set: nb pathway associated=12}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 19:03, 14 January 2021

Reaction GAPOXNPHOSPHN-RXN

  • direction:
    • reversible
  • common-name:
    • glyceraldehyde 3-phosphate dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • GLUCONEO-PWY, gluconeogenesis I:
    • 12 reactions found over 13 reactions in the full pathway
  • P124-PWY, Bifidobacterium shunt:
    • 12 reactions found over 15 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle):
    • 11 reactions found over 12 reactions in the full pathway
  • P122-PWY, heterolactic fermentation:
    • 16 reactions found over 18 reactions in the full pathway
  • PWY-5484, glycolysis II (from fructose 6-phosphate):
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-1042, glycolysis IV (plant cytosol):
    • 9 reactions found over 10 reactions in the full pathway
  • GLYCOLYSIS, glycolysis I (from glucose 6-phosphate):
    • 11 reactions found over 12 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY, glycolysis III (from glucose):
    • 10 reactions found over 11 reactions in the full pathway
  • SUCSYN-PWY, sucrose biosynthesis I (from photosynthesis):
    • 6 reactions found over 7 reactions in the full pathway
  • PWY66-399, gluconeogenesis III:
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-6901, superpathway of glucose and xylose degradation:
    • 10 reactions found over 8 reactions in the full pathway
  • PWY-7003, glycerol degradation to butanol:
    • 8 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-17121&oldid=102479"