Difference between revisions of "RXN-17132"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OHMETHYLBILANESYN-RXN OHMETHYLBILANESYN-RXN] == * direction: ** left-to-right * common-name: ** hyd...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALCOHOL-DEHYDROGENASE-NADP+-RXN ALCOHOL-DEHYDROGENASE-NADP+-RXN] == * direction: ** reversible * co...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OHMETHYLBILANESYN-RXN OHMETHYLBILANESYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALCOHOL-DEHYDROGENASE-NADP+-RXN ALCOHOL-DEHYDROGENASE-NADP+-RXN] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** hydroxymethylbilane synthase
+
** alcohol dehydrogenase (nadp+)
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.5.1.61 ec-2.5.1.61]
+
** [http://enzyme.expasy.org/EC/1.1.1.71 ec-1.1.1.71]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 4 [[PORPHOBILINOGEN]][c] '''+''' 1 [[WATER]][c] '''=>''' 4 [[AMMONIUM]][c] '''+''' 1 [[HYDROXYMETHYLBILANE]][c]
+
* 1 [[Alcohols]][c] '''+''' 1 [[NAD-P-OR-NOP]][c] '''<=>''' 1 [[Aldehydes]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02237]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ19151]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10501]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ13034]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06456]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ05644]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
* Gene: [[SJ12574]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ07103]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06470]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5189 PWY-5189]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5188 PWY-5188]
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
{{#set: direction=reversible}}
−
* RHEA:
+
{{#set: common-name=alcohol dehydrogenase (nadp+)}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13185 13185]
+
{{#set: ec-number=ec-1.1.1.71}}
−
* LIGAND-RXN:
+
{{#set: nb gene associated=8}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00084 R00084]
+
{{#set: nb pathway associated=0}}
−
* UNIPROT:
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/Q57989 Q57989]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/O29026 O29026]
 
−
** [http://www.uniprot.org/uniprot/P64336 P64336]
 
−
** [http://www.uniprot.org/uniprot/Q9ZMJ7 Q9ZMJ7]
 
−
** [http://www.uniprot.org/uniprot/Q9PHW9 Q9PHW9]
 
−
** [http://www.uniprot.org/uniprot/Q9JVS4 Q9JVS4]
 
−
** [http://www.uniprot.org/uniprot/P28464 P28464]
 
−
** [http://www.uniprot.org/uniprot/Q9K0P6 Q9K0P6]
 
−
** [http://www.uniprot.org/uniprot/P56140 P56140]
 
−
** [http://www.uniprot.org/uniprot/Q9Y9J0 Q9Y9J0]
 
−
** [http://www.uniprot.org/uniprot/Q9RRY0 Q9RRY0]
 
−
** [http://www.uniprot.org/uniprot/O26960 O26960]
 
−
** [http://www.uniprot.org/uniprot/Q9ZD77 Q9ZD77]
 
−
** [http://www.uniprot.org/uniprot/P06983 P06983]
 
−
** [http://www.uniprot.org/uniprot/P13446 P13446]
 
−
** [http://www.uniprot.org/uniprot/P08397 P08397]
 
−
** [http://www.uniprot.org/uniprot/P22907 P22907]
 
−
** [http://www.uniprot.org/uniprot/P19356 P19356]
 
−
** [http://www.uniprot.org/uniprot/Q43082 Q43082]
 
−
** [http://www.uniprot.org/uniprot/P40129 P40129]
 
−
** [http://www.uniprot.org/uniprot/P30527 P30527]
 
−
** [http://www.uniprot.org/uniprot/P28789 P28789]
 
−
** [http://www.uniprot.org/uniprot/Q60169 Q60169]
 
−
** [http://www.uniprot.org/uniprot/Q43316 Q43316]
 
−
** [http://www.uniprot.org/uniprot/Q49808 Q49808]
 
−
** [http://www.uniprot.org/uniprot/P73660 P73660]
 
−
** [http://www.uniprot.org/uniprot/Q9WX16 Q9WX16]
 
−
** [http://www.uniprot.org/uniprot/Q09899 Q09899]
 
−
** [http://www.uniprot.org/uniprot/Q9ZND1 Q9ZND1]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=hydroxymethylbilane synthase}}
 
−
{{#set: ec-number=ec-2.5.1.61}}
 
−
{{#set: nb gene associated=1}}
 
−
{{#set: nb pathway associated=2}}
 
−
{{#set: reconstruction category=orthology|annotation}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 14:26, 26 August 2019

Reaction ALCOHOL-DEHYDROGENASE-NADP+-RXN

  • direction:
    • reversible
  • common-name:
    • alcohol dehydrogenase (nadp+)
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-17132&oldid=23098"