Difference between revisions of "RXN-17252"

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(Created page with "Category:reaction == Reaction RXN-17878 == * direction: ** left-to-right * common-name: ** methionine aminopeptidase * ec-number: ** [http://enzyme.expasy.org/EC/3.4.11.18...")
(Created page with "Category:reaction == Reaction RXN-17252 == * direction: ** left-to-right * common-name: ** pheophorbide a oxygenase == Reaction formula == * 1 CPD-7061[c] '''+''' 1 ...")
 
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-17878 ==
+
== Reaction RXN-17252 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** methionine aminopeptidase
+
** pheophorbide a oxygenase
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/3.4.11.18 ec-3.4.11.18]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[L-methionyl-L-valyl-Protein]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[MET]][c] '''+''' 1 [[N-terminal-L-valine]][c]
+
* 1 [[CPD-7061]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 1 [[CPD-18666]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ02903]]
+
* Gene: [[SJ17313]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ16573]]
+
* Gene: [[SJ22311]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ16932]]
+
* Gene: [[SJ07178]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ16939]]
+
* Gene: [[SJ00278]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ01604]]
+
* Gene: [[SJ22309]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ18138]]
+
* Gene: [[SJ08869]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7800]], Ac/N-end rule pathway:
+
* [[PWY-6927]], chlorophyll a degradation II:
−
** '''6''' reactions found over '''21''' reactions in the full pathway
+
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5098]], chlorophyll a degradation I:
 +
** '''2''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR121230
+
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R11227 R11227]
 +
* METANETX-RXN : MNXR114525
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=48161 48161]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=methionine aminopeptidase}}
+
{{#set: common-name=pheophorbide a oxygenase}}
−
{{#set: ec-number=ec-3.4.11.18}}
 
 
{{#set: nb gene associated=6}}
 
{{#set: nb gene associated=6}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction RXN-17252

  • direction:
    • left-to-right
  • common-name:
    • pheophorbide a oxygenase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6927, chlorophyll a degradation II:
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-5098, chlorophyll a degradation I:
    • 2 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

  • LIGAND-RXN:
  • METANETX-RXN : MNXR114525
  • RHEA:





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