Difference between revisions of "RXN-17274"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SAMDECARB-RXN SAMDECARB-RXN] == * direction: ** left-to-right * common-name: ** adenosylmethionine...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATIN-RXN AGMATIN-RXN] == * direction: ** left-to-right * common-name: ** agmatinase * ec-number:...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SAMDECARB-RXN SAMDECARB-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=AGMATIN-RXN AGMATIN-RXN] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** adenosylmethionine decarboxylase
+
** agmatinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.1.50 ec-4.1.1.50]
+
** [http://enzyme.expasy.org/EC/3.5.3.11 ec-3.5.3.11]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[PROTON]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINAMINE]][c]
+
* 1 [[AGMATHINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PUTRESCINE]][c] '''+''' 1 [[UREA]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ16226]]
+
* Gene: [[SJ00773]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07458]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[BSUBPOLYAMSYN-PWY]], spermidine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=BSUBPOLYAMSYN-PWY BSUBPOLYAMSYN-PWY]
+
* [[PWY-6305]], putrescine biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6305 PWY-6305]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY0-823]], L-arginine degradation III (arginine decarboxylase/agmatinase pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-823 PWY0-823]
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6834]], spermidine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6834 PWY-6834]
+
* [[PWY-40]], putrescine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-40 PWY-40]
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[ARGSPECAT-PWY]], spermine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=ARGSPECAT-PWY ARGSPECAT-PWY]
 
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15982 15982]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13929 13929]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00178 R00178]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01157 R01157]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P82184 P82184]
+
** [http://www.uniprot.org/uniprot/P60654 P60654]
−
** [http://www.uniprot.org/uniprot/P21182 P21182]
+
** [http://www.uniprot.org/uniprot/P60653 P60653]
−
** [http://www.uniprot.org/uniprot/P0A7F6 P0A7F6]
+
** [http://www.uniprot.org/uniprot/P60651 P60651]
−
** [http://www.uniprot.org/uniprot/P17707 P17707]
+
** [http://www.uniprot.org/uniprot/Q57757 Q57757]
−
** [http://www.uniprot.org/uniprot/P28918 P28918]
+
** [http://www.uniprot.org/uniprot/P73270 P73270]
−
** [http://www.uniprot.org/uniprot/P17708 P17708]
 
−
** [http://www.uniprot.org/uniprot/P50243 P50243]
 
−
** [http://www.uniprot.org/uniprot/P46255 P46255]
 
−
** [http://www.uniprot.org/uniprot/Q04694 Q04694]
 
−
** [http://www.uniprot.org/uniprot/Q42679 Q42679]
 
−
** [http://www.uniprot.org/uniprot/Q42829 Q42829]
 
−
** [http://www.uniprot.org/uniprot/P79888 P79888]
 
−
** [http://www.uniprot.org/uniprot/O04009 O04009]
 
−
** [http://www.uniprot.org/uniprot/O24575 O24575]
 
−
** [http://www.uniprot.org/uniprot/Q43820 Q43820]
 
−
** [http://www.uniprot.org/uniprot/Q39676 Q39676]
 
−
** [http://www.uniprot.org/uniprot/Q39677 Q39677]
 
−
** [http://www.uniprot.org/uniprot/O49972 O49972]
 
−
** [http://www.uniprot.org/uniprot/O65354 O65354]
 
−
** [http://www.uniprot.org/uniprot/O02655 O02655]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=adenosylmethionine decarboxylase}}
+
{{#set: common-name=agmatinase}}
−
{{#set: ec-number=ec-4.1.1.50}}
+
{{#set: ec-number=ec-3.5.3.11}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=3}}
 
{{#set: nb pathway associated=3}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:28, 26 August 2019

Reaction AGMATIN-RXN

  • direction:
    • left-to-right
  • common-name:
    • agmatinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6305, putrescine biosynthesis IV: PWY-6305
    • 4 reactions found over 4 reactions in the full pathway
  • PWY0-823, L-arginine degradation III (arginine decarboxylase/agmatinase pathway): PWY0-823
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-40, putrescine biosynthesis I: PWY-40
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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