Difference between revisions of "RXN-17351"
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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7948 PWY-7948] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-33208 tax-3...") |
(Created page with "Category:reaction == Reaction BRANCHED-CHAINAMINOTRANSFERILEU-RXN == * direction: ** reversible * common-name: ** isoleucine transaminase * ec-number: ** [http://enzyme.ex...") |
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− | [[Category: | + | [[Category:reaction]] |
− | == | + | == Reaction BRANCHED-CHAINAMINOTRANSFERILEU-RXN == |
− | * | + | * direction: |
− | + | ** reversible | |
− | ** | ||
* common-name: | * common-name: | ||
− | ** | + | ** isoleucine transaminase |
− | == Reaction(s) | + | * ec-number: |
− | * [[ | + | ** [http://enzyme.expasy.org/EC/2.6.1.42 ec-2.6.1.42] |
− | * [[ | + | == Reaction formula == |
− | == | + | * 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[ILE]][c] '''<=>''' 1 [[2-KETO-3-METHYL-VALERATE]][c] '''+''' 1 [[GLT]][c] |
− | * [http:// | + | == Gene(s) associated with this reaction == |
− | * [http:// | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | * [http:// | + | * Gene: [[SJ04586]] |
− | * [http:// | + | ** Category: [[annotation]] |
− | * [http:// | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
− | * [http:// | + | ** Category: [[orthology]] |
− | * [http:// | + | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
− | {{#set: | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
− | {{#set: | + | * Gene: [[SJ06412]] |
− | {{#set: nb | + | ** Category: [[annotation]] |
− | {{#set: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
− | {{#set: | + | ** Category: [[orthology]] |
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ13018]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ17677]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | </div> | ||
+ | == Pathway(s) == | ||
+ | * [[ILEUSYN-PWY]], L-isoleucine biosynthesis I (from threonine): | ||
+ | ** '''4''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[ILEUDEG-PWY]], L-isoleucine degradation I: | ||
+ | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-5078]], L-isoleucine degradation II: | ||
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-5103]], L-isoleucine biosynthesis III: | ||
+ | ** '''3''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[PWY-5104]], L-isoleucine biosynthesis IV: | ||
+ | ** '''2''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-5101]], L-isoleucine biosynthesis II: | ||
+ | ** '''4''' reactions found over '''8''' reactions in the full pathway | ||
+ | * [[PWY-5108]], L-isoleucine biosynthesis V: | ||
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
+ | == Reconstruction information == | ||
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | == External links == | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24804 24804] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R02199 R02199] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PIM6 Q9PIM6] | ||
+ | ** [http://www.uniprot.org/uniprot/P38891 P38891] | ||
+ | ** [http://www.uniprot.org/uniprot/P47176 P47176] | ||
+ | ** [http://www.uniprot.org/uniprot/O86505 O86505] | ||
+ | ** [http://www.uniprot.org/uniprot/O14370 O14370] | ||
+ | ** [http://www.uniprot.org/uniprot/O32954 O32954] | ||
+ | ** [http://www.uniprot.org/uniprot/P0AB80 P0AB80] | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=isoleucine transaminase}} | ||
+ | {{#set: ec-number=ec-2.6.1.42}} | ||
+ | {{#set: nb gene associated=4}} | ||
+ | {{#set: nb pathway associated=7}} | ||
+ | {{#set: reconstruction category=annotation|orthology}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
+ | {{#set: reconstruction comment=n.a}} | ||
+ | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}} |
Revision as of 20:43, 18 December 2020
Contents
Reaction BRANCHED-CHAINAMINOTRANSFERILEU-RXN
- direction:
- reversible
- common-name:
- isoleucine transaminase
- ec-number:
Reaction formula
- 1 2-KETOGLUTARATE[c] + 1 ILE[c] <=> 1 2-KETO-3-METHYL-VALERATE[c] + 1 GLT[c]
Gene(s) associated with this reaction
- Gene: SJ04586
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ06412
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ13018
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
- Gene: SJ17677
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: orthology
Pathway(s)
- ILEUSYN-PWY, L-isoleucine biosynthesis I (from threonine):
- 4 reactions found over 7 reactions in the full pathway
- ILEUDEG-PWY, L-isoleucine degradation I:
- 5 reactions found over 6 reactions in the full pathway
- PWY-5078, L-isoleucine degradation II:
- 2 reactions found over 3 reactions in the full pathway
- PWY-5103, L-isoleucine biosynthesis III:
- 3 reactions found over 7 reactions in the full pathway
- PWY-5104, L-isoleucine biosynthesis IV:
- 2 reactions found over 6 reactions in the full pathway
- PWY-5101, L-isoleucine biosynthesis II:
- 4 reactions found over 8 reactions in the full pathway
- PWY-5108, L-isoleucine biosynthesis V:
- 2 reactions found over 3 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links