Difference between revisions of "RXN-17427"
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(Created page with "Category:reaction == Reaction 3.2.1.38-RXN == * direction: ** left-to-right * common-name: ** beta-d-fucosidase * ec-number: ** [http://enzyme.expasy.org/EC/3.2.1.38 ec-3....") |
(Created page with "Category:reaction == Reaction ALANINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** alanine-trna ligase * ec-number: ** [http://enzyme.expasy.org/EC/...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction ALANINE--TRNA-LIGASE-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** alanine-trna ligase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/6.1.1.7 ec-6.1.1.7] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[ALA-tRNAs]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[L-ALPHA-ALANINE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-ALA-tRNAs]][c] '''+''' 1 [[PPI]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ05317]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ09204]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | * Gene: [[SJ02907]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[TRNA-CHARGING-PWY]], tRNA charging: | ||
+ | ** '''21''' reactions found over '''21''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12541 12541] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R03038 R03038] | ||
* UNIPROT: | * UNIPROT: | ||
− | ** [http://www.uniprot.org/uniprot/ | + | ** [http://www.uniprot.org/uniprot/P56452 P56452] |
+ | ** [http://www.uniprot.org/uniprot/O27718 O27718] | ||
+ | ** [http://www.uniprot.org/uniprot/O34526 O34526] | ||
+ | ** [http://www.uniprot.org/uniprot/P47534 P47534] | ||
+ | ** [http://www.uniprot.org/uniprot/O58035 O58035] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PI05 Q9PI05] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JTG4 Q9JTG4] | ||
+ | ** [http://www.uniprot.org/uniprot/Q57984 Q57984] | ||
+ | ** [http://www.uniprot.org/uniprot/O51238 O51238] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CEW0 Q9CEW0] | ||
+ | ** [http://www.uniprot.org/uniprot/O83980 O83980] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9X1B6 Q9X1B6] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZJY5 Q9ZJY5] | ||
+ | ** [http://www.uniprot.org/uniprot/O67323 O67323] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9ZCA4 Q9ZCA4] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9Z714 Q9Z714] | ||
+ | ** [http://www.uniprot.org/uniprot/P49588 P49588] | ||
+ | ** [http://www.uniprot.org/uniprot/P43815 P43815] | ||
+ | ** [http://www.uniprot.org/uniprot/P50475 P50475] | ||
+ | ** [http://www.uniprot.org/uniprot/P24075 P24075] | ||
+ | ** [http://www.uniprot.org/uniprot/P27866 P27866] | ||
+ | ** [http://www.uniprot.org/uniprot/P35029 P35029] | ||
+ | ** [http://www.uniprot.org/uniprot/P40825 P40825] | ||
+ | ** [http://www.uniprot.org/uniprot/P75368 P75368] | ||
+ | ** [http://www.uniprot.org/uniprot/Q48976 Q48976] | ||
+ | ** [http://www.uniprot.org/uniprot/P00957 P00957] | ||
+ | ** [http://www.uniprot.org/uniprot/P21894 P21894] | ||
+ | ** [http://www.uniprot.org/uniprot/O50189 O50189] | ||
+ | </div> | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=alanine-trna ligase}} |
− | {{#set: ec-number=ec- | + | {{#set: ec-number=ec-6.1.1.7}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=3}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=1}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=annotation|orthology}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pathwaytools|pantograph}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 13:19, 14 January 2021
Contents
Reaction ALANINE--TRNA-LIGASE-RXN
- direction:
- left-to-right
- common-name:
- alanine-trna ligase
- ec-number:
Reaction formula
- 1 ALA-tRNAs[c] + 1 ATP[c] + 1 L-ALPHA-ALANINE[c] => 1 AMP[c] + 1 Charged-ALA-tRNAs[c] + 1 PPI[c]
Gene(s) associated with this reaction
- Gene: SJ05317
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ09204
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ02907
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- TRNA-CHARGING-PWY, tRNA charging:
- 21 reactions found over 21 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links