Difference between revisions of "RXN-17428"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPMANDEHYDRA-RXN GDPMANDEHYDRA-RXN] == * direction: ** left-to-right * common-name: ** gdp-mannose...")
(Created page with "Category:reaction == Reaction RXN-17428 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.3.1.83 ec-1.3.1.83] == Reaction formula == * 1 CP...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPMANDEHYDRA-RXN GDPMANDEHYDRA-RXN] ==
+
== Reaction RXN-17428 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** gdp-mannose 4,6-dehydratase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.47 ec-4.2.1.47]
+
** [http://enzyme.expasy.org/EC/1.3.1.83 ec-1.3.1.83]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[GDP-MANNOSE]][c] '''=>''' 1 [[GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[CPD-7005]][c] '''+''' 3 [[NADPH]][c] '''+''' 3 [[PROTON]][c] '''=>''' 1 [[CHLOROPHYLL-A]][c] '''+''' 3 [[NADP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ04008]]
+
* Gene: [[SJ15264]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ21655]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5739]], GDP-D-perosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5739 PWY-5739]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-7573]], GDP-mycosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7573 PWY-7573]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5740]], GDP-L-colitose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5740 PWY-5740]
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-66]], GDP-L-fucose biosynthesis I (from GDP-D-mannose): [http://metacyc.org/META/NEW-IMAGE?object=PWY-66 PWY-66]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[GDPRHAMSYN-PWY]], GDP-D-rhamnose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=GDPRHAMSYN-PWY GDPRHAMSYN-PWY]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5738]], GDP-6-deoxy-D-talose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5738 PWY-5738]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* METANETX-RXN : MNXR100109
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23821 23821]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00888 R00888]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q84439 Q84439]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=gdp-mannose 4,6-dehydratase}}
+
{{#set: ec-number=ec-1.3.1.83}}
−
{{#set: ec-number=ec-4.2.1.47}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb gene associated=2}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb pathway associated=6}}
 
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction RXN-17428

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR100109





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