Difference between revisions of "RXN-17480"

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(Created page with "Category:reaction == Reaction METHENYLTHFCYCLOHYDRO-RXN == * direction: ** reversible * common-name: ** methenyltetrahydrofolate cyclohydrolase * ec-number: ** [http://enz...")
(Created page with "Category:reaction == Reaction 1.8.4.12-RXN == * direction: ** reversible * common-name: ** protein-methionine-s-oxide reductase ** peptide-methionine (r)-s-oxide reductase...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction METHENYLTHFCYCLOHYDRO-RXN ==
+
== Reaction 1.8.4.12-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** methenyltetrahydrofolate cyclohydrolase
+
** protein-methionine-s-oxide reductase
 +
** peptide-methionine (r)-s-oxide reductase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.5.4.9 ec-3.5.4.9]
+
** [http://enzyme.expasy.org/EC/1.8.4.12 ec-1.8.4.12]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[5-10-METHENYL-THF-GLU-N]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[FORMYL-THF-GLU-N]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[Ox-Thioredoxin]][c] '''+''' 1 [[Protein-L-methionine]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[Protein-L-methionine-R-S-oxides]][c] '''+''' 1 [[Red-Thioredoxin]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12991]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ13121]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ10799]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ17041]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ17385]]
+
* Gene: [[SJ04839]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08158]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ18862]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ02295]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ12054]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ11954]]
+
* Gene: [[SJ02452]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* [[1CMET2-PWY]], folate transformations III (E. coli):
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-5497]], purine nucleobases degradation II (anaerobic):
 
−
** '''10''' reactions found over '''24''' reactions in the full pathway
 
−
* [[P164-PWY]], purine nucleobases degradation I (anaerobic):
 
−
** '''6''' reactions found over '''17''' reactions in the full pathway
 
−
* [[CODH-PWY]], reductive acetyl coenzyme A pathway I (homoacetogenic bacteria):
 
−
** '''4''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-5030]], L-histidine degradation III:
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7909]], formaldehyde oxidation VII (THF pathway):
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-3841]], folate transformations II (plants):
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-2201]], folate transformations I:
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6613]], tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-1722]], formate assimilation into 5,10-methylenetetrahydrofolate:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
</div>
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23703 23703]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24164 24164]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01655 R01655]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07607 R07607]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P09440 P09440]
 
−
** [http://www.uniprot.org/uniprot/P07245 P07245]
 
−
** [http://www.uniprot.org/uniprot/P11586 P11586]
 
−
** [http://www.uniprot.org/uniprot/P18155 P18155]
 
−
** [http://www.uniprot.org/uniprot/P44313 P44313]
 
−
** [http://www.uniprot.org/uniprot/P47259 P47259]
 
−
** [http://www.uniprot.org/uniprot/P13995 P13995]
 
−
** [http://www.uniprot.org/uniprot/P54382 P54382]
 
−
** [http://www.uniprot.org/uniprot/O67736 O67736]
 
−
** [http://www.uniprot.org/uniprot/Q9JWI9 Q9JWI9]
 
−
** [http://www.uniprot.org/uniprot/Q9PP68 Q9PP68]
 
−
** [http://www.uniprot.org/uniprot/P24186 P24186]
 
−
** [http://www.uniprot.org/uniprot/Q04448 Q04448]
 
−
** [http://www.uniprot.org/uniprot/Q60006 Q60006]
 
−
** [http://www.uniprot.org/uniprot/Q27772 Q27772]
 
−
** [http://www.uniprot.org/uniprot/P51696 P51696]
 
−
** [http://www.uniprot.org/uniprot/O68031 O68031]
 
−
** [http://www.uniprot.org/uniprot/Q9ZTV0 Q9ZTV0]
 
−
** [http://www.uniprot.org/uniprot/Q9X7F6 Q9X7F6]
 
−
</div>
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=methenyltetrahydrofolate cyclohydrolase}}
+
{{#set: common-name=peptide-methionine (r)-s-oxide reductase|protein-methionine-s-oxide reductase}}
−
{{#set: ec-number=ec-3.5.4.9}}
+
{{#set: ec-number=ec-1.8.4.12}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=8}}
−
{{#set: nb pathway associated=10}}
+
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:04, 5 January 2021

Reaction 1.8.4.12-RXN

  • direction:
    • reversible
  • common-name:
    • protein-methionine-s-oxide reductase
    • peptide-methionine (r)-s-oxide reductase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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