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| Line 1: |
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| − | [[Category:reaction]] | + | [[Category:pathway]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7682 RXN-7682] == | + | == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7351 PWY-7351] == |
| − | * direction: | + | * taxonomic-range: |
| − | ** left-to-right | + | ** [http://metacyc.org/META/NEW-IMAGE?object=tax-7586 tax-7586] |
| | + | ** [http://metacyc.org/META/NEW-IMAGE?object=tax-6040 tax-6040] |
| | + | ** [http://metacyc.org/META/NEW-IMAGE?object=tax-6073 tax-6073] |
| | + | ** [http://metacyc.org/META/NEW-IMAGE?object=tax-33317 tax-33317] |
| | * common-name: | | * common-name: |
| − | ** hypoxanthine hydroxylase | + | ** pyruvate fermentation to opines |
| − | * ec-number:
| + | == Reaction(s) found == |
| − | ** [http://enzyme.expasy.org/EC/1.17.1.4 ec-1.17.1.4]
| + | * [[1.5.1.11-RXN]] |
| − | == Reaction formula == | + | == Reaction(s) not found == |
| − | * 1 [[HYPOXANTHINE]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[XANTHINE]][c]
| + | * [http://metacyc.org/META/NEW-IMAGE?object=BETA-ALANOPINE-DEHYDROGENASE-RXN BETA-ALANOPINE-DEHYDROGENASE-RXN] |
| − | == Gene(s) associated with this reaction ==
| + | * [http://metacyc.org/META/NEW-IMAGE?object=TAUROPINE-DEHYDROGENASE-RXN TAUROPINE-DEHYDROGENASE-RXN] |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| + | * [http://metacyc.org/META/NEW-IMAGE?object=ALANOPINE-DEHYDROGENASE-RXN ALANOPINE-DEHYDROGENASE-RXN] |
| − | * Gene: [[SJ05673]] | + | * [http://metacyc.org/META/NEW-IMAGE?object=STROMBINE-DEHYDROGENASE-RXN STROMBINE-DEHYDROGENASE-RXN] |
| − | ** Category: [[annotation]]
| + | {{#set: taxonomic-range=tax-33317|tax-6073|tax-7586|tax-6040}} |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| + | {{#set: common-name=pyruvate fermentation to opines}} |
| − | * Gene: [[SJ05668]]
| + | {{#set: nb reaction found=1}} |
| − | ** Category: [[annotation]]
| + | {{#set: completion rate=0.2}} |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| + | {{#set: nb total reaction=5}} |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ13098]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ13101]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[SJ05674]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ13100]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[SJ13095]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[SJ05660]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | </div>
| |
| − | == Pathway(s) == | |
| − | * [[PWY-6596]], adenosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6596 PWY-6596] | |
| − | ** '''7''' reactions found over '''8''' reactions in the full pathway | |
| − | * [[P164-PWY]], purine nucleobases degradation I (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=P164-PWY P164-PWY]
| |
| − | ** '''6''' reactions found over '''17''' reactions in the full pathway | |
| − | * [[SALVADEHYPOX-PWY]], adenosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=SALVADEHYPOX-PWY SALVADEHYPOX-PWY]
| |
| − | ** '''5''' reactions found over '''5''' reactions in the full pathway
| |
| − | == Reconstruction information ==
| |
| − | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | == External links ==
| |
| − | * RHEA:
| |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24671 24671]
| |
| − | * LIGAND-RXN:
| |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R01768 R01768]
| |
| − | {{#set: direction=left-to-right}} | |
| − | {{#set: common-name=hypoxanthine hydroxylase}} | |
| − | {{#set: ec-number=ec-1.17.1.4}} | |
| − | {{#set: nb gene associated=8}} | |
| − | {{#set: nb pathway associated=3}} | |
| − | {{#set: reconstruction category=orthology|annotation}}
| |
| − | {{#set: reconstruction tool=pantograph|pathwaytools}}
| |
| − | {{#set: reconstruction comment=n.a}}
| |
| − | {{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
| |
