Difference between revisions of "RXN-17481"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALONYL-COA-ACP-TRANSACYL-RXN MALONYL-COA-ACP-TRANSACYL-RXN] == * direction: ** left-to-right * com...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FESO3OXI-RXN FESO3OXI-RXN] == * direction: ** reversible == Reaction formula == * 2 FE+3[c] '''...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALONYL-COA-ACP-TRANSACYL-RXN MALONYL-COA-ACP-TRANSACYL-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FESO3OXI-RXN FESO3OXI-RXN] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
−
* common-name:
 
−
** fatty acid synthase
 
−
** malonyl-coa-acp transacylase
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
 
−
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 
−
** [http://enzyme.expasy.org/EC/2.3.1.39 ec-2.3.1.39]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ACP]][c] '''+''' 1 [[MALONYL-COA]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[MALONYL-ACP]][c]
+
* 2 [[FE+3]][c] '''+''' 1 [[SO3]][c] '''+''' 1 [[WATER]][c] '''<=>''' 2 [[FE+2]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[SULFATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* Gene: [[SJ13014]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06944]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ11672]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00320]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04769]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ00613]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ15983]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ19629]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ10624]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ18059]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06617]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06616]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04443]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ17743]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ03883]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388]
+
* [[FESULFOX-PWY]], sulfur oxidation II (Fe+3-dependent): [http://metacyc.org/META/NEW-IMAGE?object=FESULFOX-PWY FESULFOX-PWY]
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-4381]], fatty acid biosynthesis initiation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4381 PWY-4381]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6799]], fatty acid biosynthesis (plant mitochondria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6799 PWY-6799]
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
{{#set: direction=reversible}}
−
* LIGAND-RXN:
+
{{#set: nb gene associated=0}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01626 R01626]
+
{{#set: nb pathway associated=1}}
−
* UNIPROT:
+
{{#set: reconstruction category=gap-filling}}
−
** [http://www.uniprot.org/uniprot/P72391 P72391]
+
{{#set: reconstruction tool=meneco}}
−
** [http://www.uniprot.org/uniprot/P49327 P49327]
+
{{#set: reconstruction comment=added for gapfilling}}
−
** [http://www.uniprot.org/uniprot/O34825 O34825]
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
−
** [http://www.uniprot.org/uniprot/Q9RT24 Q9RT24]
 
−
** [http://www.uniprot.org/uniprot/Q9JW58 Q9JW58]
 
−
** [http://www.uniprot.org/uniprot/P0AAI9 P0AAI9]
 
−
** [http://www.uniprot.org/uniprot/O24916 O24916]
 
−
** [http://www.uniprot.org/uniprot/Q9JXR4 Q9JXR4]
 
−
** [http://www.uniprot.org/uniprot/Q9ZCJ6 Q9ZCJ6]
 
−
** [http://www.uniprot.org/uniprot/Q9YBK5 Q9YBK5]
 
−
** [http://www.uniprot.org/uniprot/Q9PJ11 Q9PJ11]
 
−
** [http://www.uniprot.org/uniprot/P43712 P43712]
 
−
** [http://www.uniprot.org/uniprot/Q9Z8P1 Q9Z8P1]
 
−
** [http://www.uniprot.org/uniprot/O67041 O67041]
 
−
** [http://www.uniprot.org/uniprot/Q9ZMY1 Q9ZMY1]
 
−
** [http://www.uniprot.org/uniprot/Q9PKF6 Q9PKF6]
 
−
** [http://www.uniprot.org/uniprot/P63458 P63458]
 
−
** [http://www.uniprot.org/uniprot/O84241 O84241]
 
−
** [http://www.uniprot.org/uniprot/Q9WZQ5 Q9WZQ5]
 
−
** [http://www.uniprot.org/uniprot/P71019 P71019]
 
−
** [http://www.uniprot.org/uniprot/P07149 P07149]
 
−
** [http://www.uniprot.org/uniprot/P73242 P73242]
 
−
** [http://www.uniprot.org/uniprot/Q8RU07 Q8RU07]
 
−
** [http://www.uniprot.org/uniprot/Q54205 Q54205]
 
−
** [http://www.uniprot.org/uniprot/O54437 O54437]
 
−
** [http://www.uniprot.org/uniprot/Q56692 Q56692]
 
−
** [http://www.uniprot.org/uniprot/O13698 O13698]
 
−
** [http://www.uniprot.org/uniprot/Q9RA34 Q9RA34]
 
−
** [http://www.uniprot.org/uniprot/O69476 O69476]
 
−
** [http://www.uniprot.org/uniprot/P12276 P12276]
 
−
** [http://www.uniprot.org/uniprot/P12785 P12785]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=fatty acid synthase|malonyl-coa-acp transacylase}}
 
−
{{#set: ec-number=ec-2.3.1.85|ec-2.3.1.86|ec-2.3.1.39}}
 
−
{{#set: nb gene associated=15}}
 
−
{{#set: nb pathway associated=3}}
 
−
{{#set: reconstruction category=orthology|annotation}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
 

Revision as of 14:28, 26 August 2019

Reaction FESO3OXI-RXN

  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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