Difference between revisions of "RXN-17523"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FUMARATE-REDUCTASE-NADH-RXN FUMARATE-REDUCTASE-NADH-RXN] == * direction: ** reversible * common-nam...")
(Created page with "Category:reaction == Reaction RXN-17523 == * direction: ** left-to-right * common-name: ** heme oxygenase * ec-number: ** [http://enzyme.expasy.org/EC/1.14.15.20 ec-1.14.1...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FUMARATE-REDUCTASE-NADH-RXN FUMARATE-REDUCTASE-NADH-RXN] ==
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== Reaction RXN-17523 ==
 
* direction:
 
* direction:
−
** reversible
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** left-to-right
 
* common-name:
 
* common-name:
−
** fumarate reductase (nadh)
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** heme oxygenase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.1.6 ec-1.3.1.6]
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** [http://enzyme.expasy.org/EC/1.14.15.20 ec-1.14.15.20]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[NAD]][c] '''+''' 1 [[SUC]][c] '''<=>''' 1 [[FUM]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
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* 3 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTOHEME]][c] '''+''' 8 [[PROTON]][c] '''+''' 6 [[Reduced-ferredoxins]][c] '''=>''' 1 [[BILIVERDINE]][c] '''+''' 1 [[CARBON-MONOXIDE]][c] '''+''' 1 [[FE+2]][c] '''+''' 6 [[Oxidized-ferredoxins]][c] '''+''' 3 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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* Gene: [[SJ17484]]
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* Gene: [[SJ20370]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7170]], phytochromobilin biosynthesis:
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7845]], heme degradation II:
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-5917]], phycocyanobilin biosynthesis:
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5915]], phycoerythrobilin biosynthesis I:
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7580]], phycoerythrobilin biosynthesis II:
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7579]], phycourobilin biosynthesis:
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7578]], phycoviolobilin biosynthesis:
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R11579 R11579]
 +
* METANETX-RXN : MNXR114871
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18281 18281]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=50233 50233]
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* LIGAND-RXN:
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{{#set: direction=left-to-right}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00402 R00402]
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{{#set: common-name=heme oxygenase}}
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{{#set: direction=reversible}}
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{{#set: ec-number=ec-1.14.15.20}}
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{{#set: common-name=fumarate reductase (nadh)}}
 
−
{{#set: ec-number=ec-1.3.1.6}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=0}}
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{{#set: nb pathway associated=7}}
−
{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction RXN-17523

  • direction:
    • left-to-right
  • common-name:
    • heme oxygenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7170, phytochromobilin biosynthesis:
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7845, heme degradation II:
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-5917, phycocyanobilin biosynthesis:
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5915, phycoerythrobilin biosynthesis I:
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7580, phycoerythrobilin biosynthesis II:
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7579, phycourobilin biosynthesis:
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-7578, phycoviolobilin biosynthesis:
    • 1 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

  • LIGAND-RXN:
  • METANETX-RXN : MNXR114871
  • RHEA:





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