Difference between revisions of "RXN-17653"

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(Created page with "Category:reaction == Reaction RXN-12400 == * direction: ** left-to-right * common-name: ** xyloglucan xllg oligosaccharide β-galactosidase ** beta-galactosidase ** xl...")
(Created page with "Category:reaction == Reaction CHITIN-DEACETYLASE-RXN == * direction: ** left-to-right * common-name: ** chitin deacetylase * ec-number: ** [http://enzyme.expasy.org/EC/3.5...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN-12400 ==
+
== Reaction CHITIN-DEACETYLASE-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
** xyloglucan xllg oligosaccharide β-galactosidase
+
** chitin deacetylase
** beta-galactosidase
 
** xllg xyloglucan oligosaccharide β-galactosidase
 
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/3.2.1.23 ec-3.2.1.23]
+
** [http://enzyme.expasy.org/EC/3.5.1.41 ec-3.5.1.41]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[CPD-13378]][c] '''+''' 2 [[WATER]][c] '''=>''' 1 [[CPD-13375]][c] '''+''' 2 [[D-galactopyranose]][c]
+
* 1 [[CHITIN]][c] '''+''' n [[WATER]][c] '''=>''' n [[ACET]][c] '''+''' 1 [[Chitosan]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ14193]]
+
* Gene: [[SJ10915]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
* Gene: [[SJ04558]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ10277]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
* Gene: [[SJ03139]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-6807]], xyloglucan degradation II (exoglucanase):
+
* [[PWY-7118]], chitin degradation to ethanol:
** '''3''' reactions found over '''8''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10465 10465]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R02333 R02333]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P50325 P50325]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=xyloglucan xllg oligosaccharide β-galactosidase|beta-galactosidase|xllg xyloglucan oligosaccharide β-galactosidase}}
+
{{#set: common-name=chitin deacetylase}}
{{#set: ec-number=ec-3.2.1.23}}
+
{{#set: ec-number=ec-3.5.1.41}}
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 19:03, 14 January 2021

Reaction CHITIN-DEACETYLASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • chitin deacetylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7118, chitin degradation to ethanol:
    • 5 reactions found over 6 reactions in the full pathway

Reconstruction information

External links