Difference between revisions of "RXN-17728"
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(Created page with "Category:reaction == Reaction GSADENYLATION-RXN == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.7.7.42 ec-2.7.7.42] == Reaction formula ==...") |
(Created page with "Category:reaction == Reaction RXN0-2161 == * direction: ** left-to-right * common-name: ** l-serine:trnasec ligase (amp-forming) * ec-number: ** [http://enzyme.expasy.org/...") |
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| Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction | + | == Reaction RXN0-2161 == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
| + | * common-name: | ||
| + | ** l-serine:trnasec ligase (amp-forming) | ||
* ec-number: | * ec-number: | ||
| − | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/6.1.1.11 ec-6.1.1.11] |
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ATP]][c] '''+''' 1 [[ | + | * 1 [[ATP]][c] '''+''' 1 [[SER]][c] '''+''' 1 [[tRNA-Sec]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[L-seryl-SEC-tRNAs]][c] '''+''' 1 [[PPI]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[SJ07311]] |
| + | ** Category: [[annotation]] | ||
| + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| + | * Gene: [[SJ14143]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
| + | * [[PWY-6281]], L-selenocysteine biosynthesis II (archaea and eukaryotes): | ||
| + | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
| + | * [[PWY0-901]], L-selenocysteine biosynthesis I (bacteria): | ||
| + | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| + | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
| + | * METANETX-RXN : MNXR123138 | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=42581 42581] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
| − | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R08218 R08218] |
| − | |||
| − | |||
| − | |||
| − | |||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
| − | {{#set: ec-number=ec- | + | {{#set: common-name=l-serine:trnasec ligase (amp-forming)}} |
| − | {{#set: nb gene associated= | + | {{#set: ec-number=ec-6.1.1.11}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb gene associated=2}} |
| − | {{#set: reconstruction category=orthology}} | + | {{#set: nb pathway associated=2}} |
| − | {{#set: reconstruction tool=pantograph}} | + | {{#set: reconstruction category=orthology|annotation}} |
| + | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus}} | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} |
Revision as of 08:37, 15 March 2021
Contents
Reaction RXN0-2161
- direction:
- left-to-right
- common-name:
- l-serine:trnasec ligase (amp-forming)
- ec-number:
Reaction formula
Gene(s) associated with this reaction
- Gene: SJ07311
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
- Gene: SJ14143
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-6281, L-selenocysteine biosynthesis II (archaea and eukaryotes):
- 4 reactions found over 4 reactions in the full pathway
- PWY0-901, L-selenocysteine biosynthesis I (bacteria):
- 2 reactions found over 3 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links
