Difference between revisions of "RXN-17776"

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(Created page with "Category:pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7663 PWY-7663] == * taxonomic-range: ** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2] *...")
(Created page with "Category:reaction == Reaction THI-P-SYN-RXN == * direction: ** left-to-right * common-name: ** thiamine phosphate synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.5...")
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[[Category:pathway]]
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[[Category:reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7663 PWY-7663] ==
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== Reaction THI-P-SYN-RXN ==
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* taxonomic-range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=tax-2 tax-2]
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** left-to-right
 
* common-name:
 
* common-name:
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** gondoate biosynthesis (anaerobic)
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** thiamine phosphate synthase
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== Reaction(s) found ==
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* ec-number:
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* [[RXN-16629]]
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** [http://enzyme.expasy.org/EC/2.5.1.3 ec-2.5.1.3]
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* [[RXN-16630]]
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== Reaction formula ==
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* [[RXN-16631]]
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* 1 [[AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[THZ-P]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[THIAMINE-P]][c]
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* [[RXN-16632]]
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== Gene(s) associated with this reaction  ==
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== Reaction(s) not found ==
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* Gene: [[SJ18183]]
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All reactions of this pathways are in present
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** Category: [[annotation]]
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{{#set: taxonomic-range=tax-2}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: common-name=gondoate biosynthesis (anaerobic)}}
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** Category: [[orthology]]
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{{#set: nb reaction found=4}}
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: completion rate=1.0}}
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: nb total reaction=4}}
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* Gene: [[SJ20500]]
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** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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== Pathway(s) ==
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* [[PWY-6908]], thiamine diphosphate biosynthesis IV (eukaryotes):
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-7356]], thiamine salvage IV (yeast):
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7357]], thiamine formation from pyrithiamine and oxythiamine (yeast):
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** '''4''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6897]], thiamine salvage II:
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** '''3''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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== External links  ==
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* RHEA:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22329 22329]
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?R03223 R03223]
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P41835 P41835]
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** [http://www.uniprot.org/uniprot/P71350 P71350]
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** [http://www.uniprot.org/uniprot/O25514 O25514]
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** [http://www.uniprot.org/uniprot/Q9PNL3 Q9PNL3]
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** [http://www.uniprot.org/uniprot/Q9JWI2 Q9JWI2]
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** [http://www.uniprot.org/uniprot/Q9ZL01 Q9ZL01]
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** [http://www.uniprot.org/uniprot/P30137 P30137]
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** [http://www.uniprot.org/uniprot/P39594 P39594]
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** [http://www.uniprot.org/uniprot/P40386 P40386]
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** [http://www.uniprot.org/uniprot/P72965 P72965]
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** [http://www.uniprot.org/uniprot/O48881 O48881]
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** [http://www.uniprot.org/uniprot/O34294 O34294]
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** [http://www.uniprot.org/uniprot/Q9ZBL5 Q9ZBL5]
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{{#set: direction=left-to-right}}
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{{#set: common-name=thiamine phosphate synthase}}
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{{#set: ec-number=ec-2.5.1.3}}
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{{#set: nb gene associated=2}}
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{{#set: nb pathway associated=4}}
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{{#set: reconstruction category=annotation|orthology}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}

Revision as of 20:45, 18 December 2020

Reaction THI-P-SYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • thiamine phosphate synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6908, thiamine diphosphate biosynthesis IV (eukaryotes):
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7356, thiamine salvage IV (yeast):
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7357, thiamine formation from pyrithiamine and oxythiamine (yeast):
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-6897, thiamine salvage II:
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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