Difference between revisions of "RXN-17785"

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(Created page with "Category:reaction == Reaction 5.99.1.2-RXN == * direction: ** reversible * common-name: ** dna topoisomerase ** topoisomerase * ec-number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:reaction == Reaction RXN-10841 == * direction: ** reversible * common-name: ** all-trans-retinol dehydrogenase * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 5.99.1.2-RXN ==
+
== Reaction RXN-10841 ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 
* common-name:
 
* common-name:
−
** dna topoisomerase
+
** all-trans-retinol dehydrogenase
−
** topoisomerase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.99.1.2 ec-5.99.1.2]
+
** [http://enzyme.expasy.org/EC/1.1.1.300 ec-1.1.1.300]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[Negatively-super-coiled-DNAs]][c] '''<=>''' 1 [[Relaxed-DNAs]][c]
+
* 1 [[CPD-13524]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[RETINAL]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ13034]]
−
* Gene: [[SJ04827]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ12574]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13260]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ02796]]
+
* Gene: [[SJ19151]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ16900]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ03763]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ04829]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ19115]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ02496]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ02723]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ15546]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ03059]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ13261]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ19269]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6857]], retinol biosynthesis:
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6861]], the visual cycle I (vertebrates):
 +
** '''1''' reactions found over '''12''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* RHEA:
−
* UNIPROT:
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25036 25036]
−
** [http://www.uniprot.org/uniprot/Q7M0H8 Q7M0H8]
+
* LIGAND-RXN:
−
** [http://www.uniprot.org/uniprot/Q07050 Q07050]
+
** [http://www.genome.jp/dbget-bin/www_bget?R08379 R08379]
−
** [http://www.uniprot.org/uniprot/Q9JWZ5 Q9JWZ5]
 
−
** [http://www.uniprot.org/uniprot/Q59046 Q59046]
 
−
** [http://www.uniprot.org/uniprot/Q9PLZ2 Q9PLZ2]
 
−
** [http://www.uniprot.org/uniprot/P47368 P47368]
 
−
** [http://www.uniprot.org/uniprot/Q9CG80 Q9CG80]
 
−
** [http://www.uniprot.org/uniprot/P43704 P43704]
 
−
** [http://www.uniprot.org/uniprot/P43012 P43012]
 
−
** [http://www.uniprot.org/uniprot/P0A620 P0A620]
 
−
** [http://www.uniprot.org/uniprot/P04786 P04786]
 
−
** [http://www.uniprot.org/uniprot/P13099 P13099]
 
−
** [http://www.uniprot.org/uniprot/P06612 P06612]
 
−
** [http://www.uniprot.org/uniprot/P11387 P11387]
 
−
** [http://www.uniprot.org/uniprot/P07799 P07799]
 
−
** [http://www.uniprot.org/uniprot/P93119 P93119]
 
−
** [http://www.uniprot.org/uniprot/O13463 O13463]
 
−
** [http://www.uniprot.org/uniprot/Q94705 Q94705]
 
−
** [http://www.uniprot.org/uniprot/Q04750 Q04750]
 
−
** [http://www.uniprot.org/uniprot/P14294 P14294]
 
−
** [http://www.uniprot.org/uniprot/P30181 P30181]
 
−
** [http://www.uniprot.org/uniprot/P34185 P34185]
 
−
** [http://www.uniprot.org/uniprot/P30189 P30189]
 
−
** [http://www.uniprot.org/uniprot/P40114 P40114]
 
−
** [http://www.uniprot.org/uniprot/P41511 P41511]
 
−
** [http://www.uniprot.org/uniprot/Q8I3Z9 Q8I3Z9]
 
−
** [http://www.uniprot.org/uniprot/Q26024 Q26024]
 
−
** [http://www.uniprot.org/uniprot/Q27529 Q27529]
 
−
** [http://www.uniprot.org/uniprot/P41512 P41512]
 
−
** [http://www.uniprot.org/uniprot/O24307 O24307]
 
−
** [http://www.uniprot.org/uniprot/P71196 P71196]
 
−
** [http://www.uniprot.org/uniprot/O70157 O70157]
 
−
** [http://www.uniprot.org/uniprot/O60126 O60126]
 
−
** [http://www.uniprot.org/uniprot/O61660 O61660]
 
−
</div>
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=topoisomerase|dna topoisomerase}}
+
{{#set: common-name=all-trans-retinol dehydrogenase}}
−
{{#set: ec-number=ec-5.99.1.2}}
+
{{#set: ec-number=ec-1.1.1.300}}
−
{{#set: nb gene associated=12}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=2}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 19:00, 14 January 2021

Reaction RXN-10841

  • direction:
    • reversible
  • common-name:
    • all-trans-retinol dehydrogenase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6857, retinol biosynthesis:
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-6861, the visual cycle I (vertebrates):
    • 1 reactions found over 12 reactions in the full pathway

Reconstruction information

External links





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