Difference between revisions of "RXN-17788"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TransportSeed-OXYGEN-MOLECULE TransportSeed-OXYGEN-MOLECULE] == * direction: ** left-to-right == Re...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNCARBAMTRANSFER-RXN ORNCARBAMTRANSFER-RXN] == * direction: ** reversible * common-name: ** ornith...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNCARBAMTRANSFER-RXN ORNCARBAMTRANSFER-RXN] == |
* direction: | * direction: | ||
− | ** | + | ** reversible |
+ | * common-name: | ||
+ | ** ornithine carbamoyltransferase | ||
+ | * ec-number: | ||
+ | ** [http://enzyme.expasy.org/EC/2.1.3.3 ec-2.1.3.3] | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 | + | * 1 [[CARBAMOYL-P]][c] '''+''' 1 [[L-ORNITHINE]][c] '''<=>''' 1 [[L-CITRULLINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
+ | * Gene: [[SJ18541]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
+ | * [[PWY-4984]], urea cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4984 PWY-4984] | ||
+ | ** '''5''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[CITRULLINE-DEG-PWY]], L-citrulline degradation: [http://metacyc.org/META/NEW-IMAGE?object=CITRULLINE-DEG-PWY CITRULLINE-DEG-PWY] | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYNBSUB-PWY ARGSYNBSUB-PWY] | ||
+ | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7400 PWY-7400] | ||
+ | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYN-PWY ARGSYN-PWY] | ||
+ | ** '''5''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-4981]], L-proline biosynthesis II (from arginine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-4981 PWY-4981] | ||
+ | ** '''3''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[CITRULBIO-PWY]], L-citrulline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=CITRULBIO-PWY CITRULBIO-PWY] | ||
+ | ** '''7''' reactions found over '''8''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
− | * category: [[ | + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
+ | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
− | {{#set: direction= | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | {{#set: nb gene associated= | + | * RHEA: |
− | {{#set: nb pathway associated= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19516 19516] |
− | {{#set: reconstruction category= | + | * LIGAND-RXN: |
− | {{#set: reconstruction tool= | + | ** [http://www.genome.jp/dbget-bin/www_bget?R01398 R01398] |
− | {{#set: reconstruction comment= | + | * UNIPROT: |
− | {{#set: reconstruction source= | + | ** [http://www.uniprot.org/uniprot/Q58291 Q58291] |
+ | ** [http://www.uniprot.org/uniprot/Q9CHD1 Q9CHD1] | ||
+ | ** [http://www.uniprot.org/uniprot/Q7M182 Q7M182] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JTI4 Q9JTI4] | ||
+ | ** [http://www.uniprot.org/uniprot/P11727 P11727] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CEY4 Q9CEY4] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9CE14 Q9CE14] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PNU6 Q9PNU6] | ||
+ | ** [http://www.uniprot.org/uniprot/P44770 P44770] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9YHY9 Q9YHY9] | ||
+ | ** [http://www.uniprot.org/uniprot/P11066 P11066] | ||
+ | ** [http://www.uniprot.org/uniprot/P11803 P11803] | ||
+ | ** [http://www.uniprot.org/uniprot/P18186 P18186] | ||
+ | ** [http://www.uniprot.org/uniprot/P05150 P05150] | ||
+ | ** [http://www.uniprot.org/uniprot/P14995 P14995] | ||
+ | ** [http://www.uniprot.org/uniprot/P06960 P06960] | ||
+ | ** [http://www.uniprot.org/uniprot/P04391 P04391] | ||
+ | ** [http://www.uniprot.org/uniprot/P00480 P00480] | ||
+ | ** [http://www.uniprot.org/uniprot/P11725 P11725] | ||
+ | ** [http://www.uniprot.org/uniprot/P21302 P21302] | ||
+ | ** [http://www.uniprot.org/uniprot/P11724 P11724] | ||
+ | ** [http://www.uniprot.org/uniprot/P08308 P08308] | ||
+ | ** [http://www.uniprot.org/uniprot/P68747 P68747] | ||
+ | ** [http://www.uniprot.org/uniprot/P00481 P00481] | ||
+ | ** [http://www.uniprot.org/uniprot/P31317 P31317] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01322 Q01322] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01323 Q01323] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01324 Q01324] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01326 Q01326] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01325 Q01325] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JYI3 Q9JYI3] | ||
+ | ** [http://www.uniprot.org/uniprot/Q01327 Q01327] | ||
+ | ** [http://www.uniprot.org/uniprot/P0A5M9 P0A5M9] | ||
+ | ** [http://www.uniprot.org/uniprot/Q02047 Q02047] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9TRC9 Q9TRC9] | ||
+ | ** [http://www.uniprot.org/uniprot/Q48296 Q48296] | ||
+ | ** [http://www.uniprot.org/uniprot/P75473 P75473] | ||
+ | ** [http://www.uniprot.org/uniprot/Q49080 Q49080] | ||
+ | ** [http://www.uniprot.org/uniprot/Q43814 Q43814] | ||
+ | ** [http://www.uniprot.org/uniprot/O53089 O53089] | ||
+ | ** [http://www.uniprot.org/uniprot/O50039 O50039] | ||
+ | </div> | ||
+ | {{#set: direction=reversible}} | ||
+ | {{#set: common-name=ornithine carbamoyltransferase}} | ||
+ | {{#set: ec-number=ec-2.1.3.3}} | ||
+ | {{#set: nb gene associated=1}} | ||
+ | {{#set: nb pathway associated=7}} | ||
+ | {{#set: reconstruction category=orthology|annotation}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
+ | {{#set: reconstruction comment=n.a}} | ||
+ | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 14:25, 26 August 2019
Contents
Reaction ORNCARBAMTRANSFER-RXN
- direction:
- reversible
- common-name:
- ornithine carbamoyltransferase
- ec-number:
Reaction formula
- 1 CARBAMOYL-P[c] + 1 L-ORNITHINE[c] <=> 1 L-CITRULLINE[c] + 1 PROTON[c] + 1 Pi[c]
Gene(s) associated with this reaction
- Gene: SJ18541
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-4984, urea cycle: PWY-4984
- 5 reactions found over 5 reactions in the full pathway
- CITRULLINE-DEG-PWY, L-citrulline degradation: CITRULLINE-DEG-PWY
- 1 reactions found over 3 reactions in the full pathway
- ARGSYNBSUB-PWY, L-arginine biosynthesis II (acetyl cycle): ARGSYNBSUB-PWY
- 9 reactions found over 9 reactions in the full pathway
- PWY-7400, L-arginine biosynthesis IV (archaebacteria): PWY-7400
- 7 reactions found over 9 reactions in the full pathway
- ARGSYN-PWY, L-arginine biosynthesis I (via L-ornithine): ARGSYN-PWY
- 5 reactions found over 4 reactions in the full pathway
- PWY-4981, L-proline biosynthesis II (from arginine): PWY-4981
- 3 reactions found over 6 reactions in the full pathway
- CITRULBIO-PWY, L-citrulline biosynthesis: CITRULBIO-PWY
- 7 reactions found over 8 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links
- RHEA:
- LIGAND-RXN:
- UNIPROT: