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| | [[Category:reaction]] | | [[Category:reaction]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CARBPSYN-RXN CARBPSYN-RXN] == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-4313-CPD-4205/WATER//CPD-16551/CPD-4209.35. RXN-4313-CPD-4205/WATER//CPD-16551/CPD-4209.35.] == |
| | * direction: | | * direction: |
| | ** left-to-right | | ** left-to-right |
| − | * common-name:
| |
| − | ** carbamoyl phosphate synthetase
| |
| − | * ec-number:
| |
| − | ** [http://enzyme.expasy.org/EC/6.3.5.5 ec-6.3.5.5]
| |
| | == Reaction formula == | | == Reaction formula == |
| − | * 2 [[ATP]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[WATER]][c] '''=>''' 2 [[ADP]][c] '''+''' 1 [[CARBAMOYL-P]][c] '''+''' 1 [[GLT]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[Pi]][c] | + | * 1.0 [[CPD-4205]][c] '''+''' 1.0 [[WATER]][c] '''=>''' 1.0 [[CPD-16551]][c] '''+''' 1.0 [[CPD-4209]][c] |
| | == Gene(s) associated with this reaction == | | == Gene(s) associated with this reaction == |
| − | * Gene: [[SJ17851]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ15949]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| | == Pathway(s) == | | == Pathway(s) == |
| − | * [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7400 PWY-7400]
| |
| − | ** '''7''' reactions found over '''9''' reactions in the full pathway
| |
| − | * [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYN-PWY ARGSYN-PWY]
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| − | ** '''5''' reactions found over '''4''' reactions in the full pathway
| |
| − | * [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYNBSUB-PWY ARGSYNBSUB-PWY]
| |
| − | ** '''9''' reactions found over '''9''' reactions in the full pathway
| |
| − | * [[PWY-5154]], L-arginine biosynthesis III (via N-acetyl-L-citrulline): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5154 PWY-5154]
| |
| − | ** '''8''' reactions found over '''9''' reactions in the full pathway
| |
| − | * [[PWY-5686]], UMP biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686]
| |
| − | ** '''6''' reactions found over '''6''' reactions in the full pathway
| |
| − | * [[PWY-7790]], UMP biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790]
| |
| − | ** '''5''' reactions found over '''6''' reactions in the full pathway
| |
| − | * [[PWY-7791]], UMP biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7791 PWY-7791]
| |
| − | ** '''5''' reactions found over '''6''' reactions in the full pathway
| |
| | == Reconstruction information == | | == Reconstruction information == |
| − | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | + | * category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling |
| − | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| | == External links == | | == External links == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| |
| − | * RHEA:
| |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18634 18634]
| |
| − | * LIGAND-RXN:
| |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R00575 R00575]
| |
| − | * UNIPROT:
| |
| − | ** [http://www.uniprot.org/uniprot/P08955 P08955]
| |
| − | ** [http://www.uniprot.org/uniprot/P13258 P13258]
| |
| − | ** [http://www.uniprot.org/uniprot/P38099 P38099]
| |
| − | ** [http://www.uniprot.org/uniprot/P27708 P27708]
| |
| − | ** [http://www.uniprot.org/uniprot/Q91437 Q91437]
| |
| − | ** [http://www.uniprot.org/uniprot/O28994 O28994]
| |
| − | ** [http://www.uniprot.org/uniprot/P57689 P57689]
| |
| − | ** [http://www.uniprot.org/uniprot/P38098 P38098]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9WZ27 Q9WZ27]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9PMG8 Q9PMG8]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9JXW8 Q9JXW8]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9JVZ6 Q9JVZ6]
| |
| − | ** [http://www.uniprot.org/uniprot/P25993 P25993]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9PIL7 Q9PIL7]
| |
| − | ** [http://www.uniprot.org/uniprot/P25994 P25994]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9JW02 Q9JW02]
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| − | ** [http://www.uniprot.org/uniprot/O25577 O25577]
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| − | ** [http://www.uniprot.org/uniprot/P52557 P52557]
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| − | ** [http://www.uniprot.org/uniprot/P46537 P46537]
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| − | ** [http://www.uniprot.org/uniprot/P18185 P18185]
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| − | ** [http://www.uniprot.org/uniprot/P07259 P07259]
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| − | ** [http://www.uniprot.org/uniprot/P20054 P20054]
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| − | ** [http://www.uniprot.org/uniprot/P05990 P05990]
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| − | ** [http://www.uniprot.org/uniprot/P14845 P14845]
| |
| − | ** [http://www.uniprot.org/uniprot/Q06950 Q06950]
| |
| − | ** [http://www.uniprot.org/uniprot/Q92115 Q92115]
| |
| − | ** [http://www.uniprot.org/uniprot/Q09794 Q09794]
| |
| − | ** [http://www.uniprot.org/uniprot/P03965 P03965]
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| − | ** [http://www.uniprot.org/uniprot/P07258 P07258]
| |
| − | ** [http://www.uniprot.org/uniprot/P00968 P00968]
| |
| − | ** [http://www.uniprot.org/uniprot/P0A6F1 P0A6F1]
| |
| − | ** [http://www.uniprot.org/uniprot/P93345 P93345]
| |
| − | ** [http://www.uniprot.org/uniprot/Q27732 Q27732]
| |
| − | ** [http://www.uniprot.org/uniprot/Q27448 Q27448]
| |
| − | ** [http://www.uniprot.org/uniprot/O50236 O50236]
| |
| − | ** [http://www.uniprot.org/uniprot/O94313 O94313]
| |
| − | ** [http://www.uniprot.org/uniprot/Q59968 Q59968]
| |
| − | ** [http://www.uniprot.org/uniprot/Q59969 Q59969]
| |
| − | ** [http://www.uniprot.org/uniprot/O50301 O50301]
| |
| − | ** [http://www.uniprot.org/uniprot/O50302 O50302]
| |
| − | </div>
| |
| | {{#set: direction=left-to-right}} | | {{#set: direction=left-to-right}} |
| − | {{#set: common-name=carbamoyl phosphate synthetase}}
| + | {{#set: nb gene associated=0}} |
| − | {{#set: ec-number=ec-6.3.5.5}}
| + | {{#set: nb pathway associated=0}} |
| − | {{#set: nb gene associated=2}} | + | {{#set: reconstruction category=gap-filling}} |
| − | {{#set: nb pathway associated=7}} | + | {{#set: reconstruction tool=meneco}} |
| − | {{#set: reconstruction category=orthology|annotation}} | + | {{#set: reconstruction comment=added for gapfilling}} |
| − | {{#set: reconstruction tool=pantograph|pathwaytools}} | + | {{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}} |
| − | {{#set: reconstruction comment=n.a}} | |
| − | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | |
