Difference between revisions of "RXN-17830"

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(Created page with "Category:reaction == Reaction RXN-10618 == * direction: ** left-to-right * common-name: ** glucuronosyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/2.4.1.17 ec...")
(Created page with "Category:reaction == Reaction RXN-9951 == <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> * direction: ** reversible * common-name:...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-10618 ==
+
== Reaction RXN-9951 ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** glucuronosyltransferase
+
** isocitrate dehydrogenase (nadp+)
−
* ec-number:
+
** nadp-dependent isocitrate dehydrogenase
−
** [http://enzyme.expasy.org/EC/2.4.1.17 ec-2.4.1.17]
+
* synonymous:
 +
** idp1
 +
** oxalosuccinate decarboxylase
 +
** oxalsuccinic decarboxylase
 +
** idp
 +
** idp2
 +
** isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
 +
** nadp-linked isocitrate dehydrogenase
 +
** nadp-specific isocitrate dehydrogenase
 +
** idh (ambiguous)
 +
** isocitrate dehydrogenase (nadp-dependent)
 +
** nadp+-icdh
 +
** nadp+-linked isocitrate dehydrogenase
 +
** triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
 +
** nadp-dependent isocitric dehydrogenase
 +
** nadp+-idh
 +
** isocitrate (nadp) dehydrogenase
 +
** nadp isocitric dehydrogenase
 +
** idp3
 +
** dual-cofactor-specific isocitrate dehydrogenase
 +
</div>
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-11404]][c] '''+''' 1 [[UDP-GLUCURONATE]][c] '''=>''' 1 [[CPD-11412]][c] '''+''' 1 [[UDP]][c]
+
* 1 [[NADP]][c] '''+''' 1 [[THREO-DS-ISO-CITRATE]][c] '''<=>''' 1 [[NADPH]][c] '''+''' 1 [[OXALO-SUCCINATE]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ08749]]
−
* Gene: [[SJ22094]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ11522]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ08300]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ07900]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ02722]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ07398]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ14192]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ08296]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ07780]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ01409]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ22626]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ07670]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ08295]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ14184]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ20720]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ07898]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ01052]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ21933]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ22623]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ16943]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6261]], thyroid hormone metabolism II (via conjugation and/or degradation):
 
−
** '''10''' reactions found over '''15''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
+
* RHEA:
−
{{#set: common-name=glucuronosyltransferase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25591 25591]
−
{{#set: ec-number=ec-2.4.1.17}}
+
* LIGAND-RXN:
−
{{#set: nb gene associated=20}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01899 R01899]
−
{{#set: nb pathway associated=1}}
+
{{#set: direction=reversible}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: common-name=isocitrate dehydrogenase (nadp+)|nadp-dependent isocitrate dehydrogenase}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: synonymous=nadp-linked isocitrate dehydrogenase|nadp-dependent isocitric dehydrogenase|idp2|oxalosuccinate decarboxylase|nadp+-idh|idh (ambiguous)|oxalsuccinic decarboxylase|isocitrate (nadp) dehydrogenase|idp3|isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase|nadp-specific isocitrate dehydrogenase|idp|nadp isocitric dehydrogenase|idp1|nadp+-linked isocitrate dehydrogenase|triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase|nadp+-icdh|isocitrate dehydrogenase (nadp-dependent)|dual-cofactor-specific isocitrate dehydrogenase}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=0}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:33, 5 January 2021

Reaction RXN-9951

  • direction:
    • reversible
  • common-name:
    • isocitrate dehydrogenase (nadp+)
    • nadp-dependent isocitrate dehydrogenase
  • synonymous:
    • idp1
    • oxalosuccinate decarboxylase
    • oxalsuccinic decarboxylase
    • idp
    • idp2
    • isocitrate (nicotinamide adenine dinucleotide phosphate) dehydrogenase
    • nadp-linked isocitrate dehydrogenase
    • nadp-specific isocitrate dehydrogenase
    • idh (ambiguous)
    • isocitrate dehydrogenase (nadp-dependent)
    • nadp+-icdh
    • nadp+-linked isocitrate dehydrogenase
    • triphosphopyridine nucleotide-linked isocitrate dehydrogenase-oxalosuccinate carboxylase
    • nadp-dependent isocitric dehydrogenase
    • nadp+-idh
    • isocitrate (nadp) dehydrogenase
    • nadp isocitric dehydrogenase
    • idp3
    • dual-cofactor-specific isocitrate dehydrogenase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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