Difference between revisions of "RXN-17878"

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(Created page with "Category:reaction == Reaction OXALATE-DECARBOXYLASE-RXN == * direction: ** left-to-right * common-name: ** oxalate decarboxylase * ec-number: ** [http://enzyme.expasy.org/...")
(Created page with "Category:reaction == Reaction RXN-4307 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.27 ec-2.5.1.27] == Reaction formula == * 1 AMP...")
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[[Category:reaction]]
 
[[Category:reaction]]
== Reaction OXALATE-DECARBOXYLASE-RXN ==
+
== Reaction RXN-4307 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
* common-name:
 
** oxalate decarboxylase
 
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/4.1.1.2 ec-4.1.1.2]
+
** [http://enzyme.expasy.org/EC/2.5.1.27 ec-2.5.1.27]
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[OXALATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[FORMATE]][c]
+
* 1 [[AMP]][c] '''+''' 1 [[CPD-4211]][c] '''=>''' 1 [[CPD-4205]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
* Gene: [[SJ12638]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ08942]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-6698]], oxalate degradation V:
+
* [[PWY-2681]], trans-zeatin biosynthesis:
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''4''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16509 16509]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15286 15286]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
** [http://www.genome.jp/dbget-bin/www_bget?R00522 R00522]
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** [http://www.genome.jp/dbget-bin/www_bget?R04038 R04038]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=oxalate decarboxylase}}
+
{{#set: ec-number=ec-2.5.1.27}}
{{#set: ec-number=ec-4.1.1.2}}
+
{{#set: nb gene associated=0}}
{{#set: nb gene associated=2}}
 
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=gap-filling}}
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=meneco}}
{{#set: reconstruction comment=n.a}}
+
{{#set: reconstruction comment=added for gapfilling}}
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}

Revision as of 15:32, 5 January 2021

Reaction RXN-4307

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-2681, trans-zeatin biosynthesis:
    • 4 reactions found over 11 reactions in the full pathway

Reconstruction information

External links