Difference between revisions of "RXN-17897"

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(Created page with "Category:reaction == Reaction RXN-15378 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.3.5.1 ec-1.3.5.1] == Reaction formula == * 1 CPD-...")
(Created page with "Category:reaction == Reaction RXN0-5398 == * direction: ** reversible * common-name: ** pseudouridine-5'-phosphate glycosidase * ec-number: ** [http://enzyme.expasy.org/EC...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-15378 ==
+
== Reaction RXN0-5398 ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 +
* common-name:
 +
** pseudouridine-5'-phosphate glycosidase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.5.1 ec-1.3.5.1]
+
** [http://enzyme.expasy.org/EC/4.2.1.70 ec-4.2.1.70]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-9612]][c] '''+''' 1 [[SUC]][c] '''=>''' 1 [[CPD-15301]][c] '''+''' 1 [[FUM]][c]
+
* 1 [[CPD-15317]][c] '''+''' 1 [[URACIL]][c] '''<=>''' 1 [[PSEUDOURIDINE-5-P]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ04700]]
−
* Gene: [[SJ02694]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18770]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ17484]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ01012]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ02118]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ19480]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6019]], pseudouridine degradation:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
+
* METANETX-RXN : MNXR141222
−
{{#set: ec-number=ec-1.3.5.1}}
+
* RHEA:
−
{{#set: nb gene associated=6}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18340 18340]
−
{{#set: nb pathway associated=0}}
+
* UNIPROT:
−
{{#set: reconstruction category=annotation|orthology}}
+
** [http://www.uniprot.org/uniprot/Q9JWF1 Q9JWF1]
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
** [http://www.uniprot.org/uniprot/Q9JTX5 Q9JTX5]
 +
** [http://www.uniprot.org/uniprot/Q9PPJ9 Q9PPJ9]
 +
** [http://www.uniprot.org/uniprot/Q9CGH0 Q9CGH0]
 +
** [http://www.uniprot.org/uniprot/Q9CI80 Q9CI80]
 +
** [http://www.uniprot.org/uniprot/Q9JX44 Q9JX44]
 +
** [http://www.uniprot.org/uniprot/Q9V1A5 Q9V1A5]
 +
** [http://www.uniprot.org/uniprot/Q9PP96 Q9PP96]
 +
** [http://www.uniprot.org/uniprot/Q9PN18 Q9PN18]
 +
** [http://www.uniprot.org/uniprot/Q9PJ89 Q9PJ89]
 +
** [http://www.uniprot.org/uniprot/Q9PNJ2 Q9PNJ2]
 +
** [http://www.uniprot.org/uniprot/Q9PLW9 Q9PLW9]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R01055 R01055]
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=pseudouridine-5'-phosphate glycosidase}}
 +
{{#set: ec-number=ec-4.2.1.70}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:34, 15 March 2021

Reaction RXN0-5398

  • direction:
    • reversible
  • common-name:
    • pseudouridine-5'-phosphate glycosidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6019, pseudouridine degradation:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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