Difference between revisions of "RXN-17900"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADENPHOSPHOR-RXN ADENPHOSPHOR-RXN] == * direction: ** reversible * common-name: ** adenosine phosph...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12399 RXN-12399] == * direction: ** left-to-right * common-name: ** xyloglucan xlxg oligosaccha...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADENPHOSPHOR-RXN ADENPHOSPHOR-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12399 RXN-12399] ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** adenosine phosphorylase
+
** xyloglucan xlxg oligosaccharide β-galactosidase
 +
** xlxg xyloglucan oligosaccharide β-galactosidase
 +
** beta-galactosidase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.4.2.1 ec-2.4.2.1]
+
** [http://enzyme.expasy.org/EC/3.2.1.23 ec-3.2.1.23]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ADENOSINE]][c] '''+''' 1 [[Pi]][c] '''<=>''' 1 [[ADENINE]][c] '''+''' 1 [[RIBOSE-1P]][c]
+
* 1 [[CPD-13377]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-13375]][c] '''+''' 1 [[D-galactopyranose]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03195]]
+
* Gene: [[SJ03139]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10277]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ04558]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ14193]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5532]], nucleoside and nucleotide degradation (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5532 PWY-5532]
+
* [[PWY-6807]], xyloglucan degradation II (exoglucanase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6807 PWY-6807]
−
** '''4''' reactions found over '''10''' reactions in the full pathway
+
** '''3''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY0-1296]], purine ribonucleosides degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1296 PWY0-1296]
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
−
* [[P121-PWY]], adenine and adenosine salvage I: [http://metacyc.org/META/NEW-IMAGE?object=P121-PWY P121-PWY]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-6609]], adenine and adenosine salvage III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6609 PWY-6609]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6611]], adenine and adenosine salvage V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6611 PWY-6611]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=left-to-right}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27645 27645]
+
{{#set: common-name=xlxg xyloglucan oligosaccharide &beta;-galactosidase|beta-galactosidase|xyloglucan xlxg oligosaccharide &beta;-galactosidase}}
−
* LIGAND-RXN:
+
{{#set: ec-number=ec-3.2.1.23}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01561 R01561]
+
{{#set: nb gene associated=4}}
−
{{#set: direction=reversible}}
+
{{#set: nb pathway associated=1}}
−
{{#set: common-name=adenosine phosphorylase}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: ec-number=ec-2.4.2.1}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: nb gene associated=1}}
 
−
{{#set: nb pathway associated=5}}
 
−
{{#set: reconstruction category=annotation}}
 
−
{{#set: reconstruction tool=pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:25, 26 August 2019

Reaction RXN-12399

  • direction:
    • left-to-right
  • common-name:
    • xyloglucan xlxg oligosaccharide β-galactosidase
    • xlxg xyloglucan oligosaccharide β-galactosidase
    • beta-galactosidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6807, xyloglucan degradation II (exoglucanase): PWY-6807
    • 3 reactions found over 8 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-17900&oldid=22791"