Difference between revisions of "RXN-17917"

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(Created page with "Category:reaction == Reaction RXN-12581 == * direction: ** left-to-right * common-name: ** all-trans-retinol dehydrogenase ** retinol dehydrogenase * ec-number: ** [http:/...")
(Created page with "Category:reaction == Reaction RXN-9969 == * direction: ** left-to-right * common-name: ** cis-prenyltransferase * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1.87 ec-2....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
== Reaction RXN-12581 ==
+
== Reaction RXN-9969 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
** all-trans-retinol dehydrogenase
+
** cis-prenyltransferase
** retinol dehydrogenase
 
 
* ec-number:
 
* ec-number:
** [http://enzyme.expasy.org/EC/1.1.1.105 ec-1.1.1.105]
+
** [http://enzyme.expasy.org/EC/2.5.1.87 ec-2.5.1.87]
 +
* synonymous:
 +
** (2e,6e)-farnesyl diphosphate di-trans,poly-cis-polyprenyl diphosphate synthase
 
== Reaction formula ==
 
== Reaction formula ==
* 1 [[CRPB-all-trans-Retinol]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[CRPB-all-trans-Retinal]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
+
* 13 [[DELTA3-ISOPENTENYL-PP]][c] '''+''' 1 [[FARNESYL-PP]][c] '''=>''' 1 [[CPD-10712]][c] '''+''' 13 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ18388]]
* Gene: [[SJ21322]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
* Gene: [[SJ20291]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ21312]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ10028]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ12574]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ05274]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ05275]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ05277]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
* Gene: [[SJ02723]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ19151]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
* Gene: [[SJ05276]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
* [[PWY-6872]], retinoate biosynthesis I:
+
* [[PWY-6129]], dolichol and dolichyl phosphate biosynthesis:
** '''1''' reactions found over '''4''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=48489 48489]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
{{#set: common-name=all-trans-retinol dehydrogenase|retinol dehydrogenase}}
+
{{#set: common-name=cis-prenyltransferase}}
{{#set: ec-number=ec-1.1.1.105}}
+
{{#set: ec-number=ec-2.5.1.87}}
{{#set: nb gene associated=11}}
+
{{#set: synonymous=(2e,6e)-farnesyl diphosphate di-trans,poly-cis-polyprenyl diphosphate synthase}}
 +
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}

Revision as of 11:26, 15 January 2021

Reaction RXN-9969

  • direction:
    • left-to-right
  • common-name:
    • cis-prenyltransferase
  • ec-number:
  • synonymous:
    • (2e,6e)-farnesyl diphosphate di-trans,poly-cis-polyprenyl diphosphate synthase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6129, dolichol and dolichyl phosphate biosynthesis:
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links