Difference between revisions of "RXN-17922"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction CHORISMATEMUT-RXN == * direction: ** reversible * common-name: ** chorismate mutase * ec-number: ** [http://enzyme.expasy.org/EC/5.4.99.5 ec-...")
(Created page with "Category:reaction == Reaction SEDOHEPTULOSE-BISPHOSPHATASE-RXN == * direction: ** left-to-right * common-name: ** sedoheptulose bisphosphatase ** sedoheptulose-bisphosphat...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction CHORISMATEMUT-RXN ==
+
== Reaction SEDOHEPTULOSE-BISPHOSPHATASE-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** chorismate mutase
+
** sedoheptulose bisphosphatase
 +
** sedoheptulose-bisphosphatase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.4.99.5 ec-5.4.99.5]
+
** [http://enzyme.expasy.org/EC/3.1.3.37 ec-3.1.3.37]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CHORISMATE]][c] '''<=>''' 1 [[PREPHENATE]][c]
+
* 1 [[D-SEDOHEPTULOSE-1-7-P2]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[D-SEDOHEPTULOSE-7-P]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ00045]]
+
* Gene: [[SJ16950]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ07700]]
+
* Gene: [[SJ10463]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ17320]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-3461]], L-tyrosine biosynthesis II:
+
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''12''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-6120]], L-tyrosine biosynthesis III:
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PHESYN]], L-phenylalanine biosynthesis I:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7626]], bacilysin biosynthesis:
 
−
** '''1''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-3462]], L-phenylalanine biosynthesis II:
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[TYRSYN]], L-tyrosine biosynthesis I:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6627]], salinosporamide A biosynthesis:
 
−
** '''3''' reactions found over '''15''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR104279
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13900 13900]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17462 17462]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01715 R01715]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01845 R01845]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P19080 P19080]
+
** [http://www.uniprot.org/uniprot/P23014 P23014]
−
** [http://www.uniprot.org/uniprot/P27603 P27603]
+
** [http://www.uniprot.org/uniprot/P46285 P46285]
−
** [http://www.uniprot.org/uniprot/P32178 P32178]
+
** [http://www.uniprot.org/uniprot/P46283 P46283]
−
** [http://www.uniprot.org/uniprot/P43900 P43900]
+
** [http://www.uniprot.org/uniprot/P46284 P46284]
−
** [http://www.uniprot.org/uniprot/Q9RQV7 Q9RQV7]
+
** [http://www.uniprot.org/uniprot/O23780 O23780]
−
** [http://www.uniprot.org/uniprot/P21204 P21204]
+
** [http://www.uniprot.org/uniprot/O20252 O20252]
−
** [http://www.uniprot.org/uniprot/Q58029 Q58029]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/Q57696 Q57696]
+
{{#set: common-name=sedoheptulose-bisphosphatase|sedoheptulose bisphosphatase}}
−
** [http://www.uniprot.org/uniprot/P43902 P43902]
+
{{#set: ec-number=ec-3.1.3.37}}
−
** [http://www.uniprot.org/uniprot/Q9PII3 Q9PII3]
+
{{#set: nb gene associated=3}}
−
** [http://www.uniprot.org/uniprot/P0A9J8 P0A9J8]
+
{{#set: nb pathway associated=1}}
−
** [http://www.uniprot.org/uniprot/P07023 P07023]
+
{{#set: reconstruction category=orthology|annotation}}
−
** [http://www.uniprot.org/uniprot/Q02286 Q02286]
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
** [http://www.uniprot.org/uniprot/Q02287 Q02287]
 
−
** [http://www.uniprot.org/uniprot/P42738 P42738]
 
−
** [http://www.uniprot.org/uniprot/O22409 O22409]
 
−
** [http://www.uniprot.org/uniprot/O22410 O22410]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=chorismate mutase}}
 
−
{{#set: ec-number=ec-5.4.99.5}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=7}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 08:33, 15 March 2021

Reaction SEDOHEPTULOSE-BISPHOSPHATASE-RXN

  • direction:
    • left-to-right
  • common-name:
    • sedoheptulose bisphosphatase
    • sedoheptulose-bisphosphatase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • CALVIN-PWY, Calvin-Benson-Bassham cycle:
    • 12 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-17922&oldid=127483"