Difference between revisions of "RXN-17924"

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(Created page with "Category:reaction == Reaction SUCCINATE--COA-LIGASE-GDP-FORMING-RXN == * direction: ** reversible * common-name: ** succinate-coa ligase * ec-number: ** [http://enzyme.exp...")
(Created page with "Category:reaction == Reaction RXN-17924 == * direction: ** left-to-right == Reaction formula == * 1 ADP[c] '''+''' 1 DNA-Ligase-L-lysine[c] '''=>''' 1 DNA-Ligase...")
 
(2 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction SUCCINATE--COA-LIGASE-GDP-FORMING-RXN ==
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== Reaction RXN-17924 ==
 
* direction:
 
* direction:
−
** reversible
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** left-to-right
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* common-name:
 
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** succinate-coa ligase
 
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/6.2.1.4 ec-6.2.1.4]
 
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[CO-A]][c] '''+''' 1 [[GTP]][c] '''+''' 1 [[SUC]][c] '''<=>''' 1 [[GDP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[SUC-COA]][c]
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* 1 [[ADP]][c] '''+''' 1 [[DNA-Ligase-L-lysine]][c] '''=>''' 1 [[DNA-Ligase-L-lysine-adenylate]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
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* Gene: [[SJ03269]]
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* Gene: [[SJ15543]]
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ21782]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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* [[PWY66-398]], TCA cycle III (animals):
 
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** '''10''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
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* RHEA:
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* METANETX-RXN : MNXR121268
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22123 22123]
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{{#set: direction=left-to-right}}
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* LIGAND-RXN:
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{{#set: nb gene associated=1}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00432 R00432]
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{{#set: nb pathway associated=0}}
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* UNIPROT:
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{{#set: reconstruction category=annotation}}
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** [http://www.uniprot.org/uniprot/Q03184 Q03184]
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{{#set: reconstruction tool=pathwaytools}}
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** [http://www.uniprot.org/uniprot/O08371 O08371]
 
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** [http://www.uniprot.org/uniprot/O84829 O84829]
 
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** [http://www.uniprot.org/uniprot/Q8LAD2 Q8LAD2]
 
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** [http://www.uniprot.org/uniprot/P53587 P53587]
 
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** [http://www.uniprot.org/uniprot/P53312 P53312]
 
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** [http://www.uniprot.org/uniprot/P36967 P36967]
 
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** [http://www.uniprot.org/uniprot/P13086 P13086]
 
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** [http://www.uniprot.org/uniprot/Q9Y436 Q9Y436]
 
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** [http://www.uniprot.org/uniprot/P68209 P68209]
 
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{{#set: direction=reversible}}
 
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{{#set: common-name=succinate-coa ligase}}
 
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{{#set: ec-number=ec-6.2.1.4}}
 
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{{#set: nb gene associated=2}}
 
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{{#set: nb pathway associated=1}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction RXN-17924

  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR121268




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