Difference between revisions of "RXN-17948"
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(Created page with "Category:reaction == Reaction R344-RXN == * direction: ** left-to-right * common-name: ** cob(i)yrinic acid a,c-diamide adenosyltransferase * ec-number: ** [http://enzyme....") |
(Created page with "Category:reaction == Reaction DETHIOBIOTIN-SYN-RXN == * direction: ** left-to-right * common-name: ** dethiobiotin synthetase * ec-number: ** [http://enzyme.expasy.org/EC/...") |
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| Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction | + | == Reaction DETHIOBIOTIN-SYN-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
| − | ** | + | ** dethiobiotin synthetase |
* ec-number: | * ec-number: | ||
| − | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/6.3.3.3 ec-6.3.3.3] |
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ATP]][c] '''+''' 1 [[ | + | * 1 [[ATP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[DIAMINONONANOATE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[DETHIOBIOTIN]][c] '''+''' 3 [[PROTON]][c] '''+''' 1 [[Pi]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[SJ14599]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
| Line 16: | Line 16: | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
| − | * [[PWY- | + | * [[PWY0-1507]], biotin biosynthesis from 8-amino-7-oxononanoate I: |
| − | ** ''' | + | ** '''3''' reactions found over '''3''' reactions in the full pathway |
| + | * [[PWY-7380]], biotin biosynthesis from 8-amino-7-oxononanoate II: | ||
| + | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| + | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| − | |||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15805 15805] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
| − | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R03182 R03182] |
| + | * UNIPROT: | ||
| + | ** [http://www.uniprot.org/uniprot/Q9JV95 Q9JV95] | ||
| + | ** [http://www.uniprot.org/uniprot/Q9PIJ1 Q9PIJ1] | ||
| + | ** [http://www.uniprot.org/uniprot/P46397 P46397] | ||
| + | ** [http://www.uniprot.org/uniprot/P22818 P22818] | ||
| + | ** [http://www.uniprot.org/uniprot/P13000 P13000] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
| − | {{#set: common-name= | + | {{#set: common-name=dethiobiotin synthetase}} |
| − | {{#set: ec-number=ec- | + | {{#set: ec-number=ec-6.3.3.3}} |
{{#set: nb gene associated=1}} | {{#set: nb gene associated=1}} | ||
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=2}} |
{{#set: reconstruction category=annotation|orthology}} | {{#set: reconstruction category=annotation|orthology}} | ||
{{#set: reconstruction tool=pathwaytools|pantograph}} | {{#set: reconstruction tool=pathwaytools|pantograph}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | ||
Revision as of 19:00, 14 January 2021
Contents
Reaction DETHIOBIOTIN-SYN-RXN
- direction:
- left-to-right
- common-name:
- dethiobiotin synthetase
- ec-number:
Reaction formula
- 1 ATP[c] + 1 CARBON-DIOXIDE[c] + 1 DIAMINONONANOATE[c] => 1 ADP[c] + 1 DETHIOBIOTIN[c] + 3 PROTON[c] + 1 Pi[c]
Gene(s) associated with this reaction
- Gene: SJ14599
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY0-1507, biotin biosynthesis from 8-amino-7-oxononanoate I:
- 3 reactions found over 3 reactions in the full pathway
- PWY-7380, biotin biosynthesis from 8-amino-7-oxononanoate II:
- 2 reactions found over 3 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links
