|
|
| (6 intermediate revisions by 3 users not shown) |
| Line 1: |
Line 1: |
| | [[Category:reaction]] | | [[Category:reaction]] |
| − | == Reaction RXN0-5224 == | + | == Reaction RXN-18210 == |
| | * direction: | | * direction: |
| | ** reversible | | ** reversible |
| − | * common-name:
| |
| − | ** carbonate dehydratase
| |
| − | ** carbonic anhydrase
| |
| − | * ec-number:
| |
| − | ** [http://enzyme.expasy.org/EC/4.2.1.1 ec-4.2.1.1]
| |
| | == Reaction formula == | | == Reaction formula == |
| − | * 1 [[HCO3]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[WATER]][c] | + | * 1 [[CPD-1130]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[CPD-19492]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] |
| | == Gene(s) associated with this reaction == | | == Gene(s) associated with this reaction == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| + | * Gene: [[SJ21291]] |
| − | * Gene: [[SJ18141]] | |
| | ** Category: [[annotation]] | | ** Category: [[annotation]] |
| | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ07765]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[SJ22175]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ07762]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ18140]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ18142]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ21158]]
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ13238]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | * Gene: [[SJ17783]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ12311]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ18135]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[SJ13240]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[SJ07324]]
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ07587]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | </div>
| |
| | == Pathway(s) == | | == Pathway(s) == |
| − | * [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum):
| |
| − | ** '''10''' reactions found over '''13''' reactions in the full pathway
| |
| − | * [[PWYQT-4429]], CO2 fixation into oxaloacetate (anaplerotic):
| |
| − | ** '''2''' reactions found over '''2''' reactions in the full pathway
| |
| − | * [[CYANCAT-PWY]], cyanate degradation:
| |
| − | ** '''2''' reactions found over '''3''' reactions in the full pathway
| |
| − | * [[PWY-5744]], glyoxylate assimilation:
| |
| − | ** '''4''' reactions found over '''13''' reactions in the full pathway
| |
| − | * [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle:
| |
| − | ** '''8''' reactions found over '''18''' reactions in the full pathway
| |
| − | * [[PWY-5743]], 3-hydroxypropanoate cycle:
| |
| − | ** '''5''' reactions found over '''13''' reactions in the full pathway
| |
| − | * [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type:
| |
| − | ** '''5''' reactions found over '''6''' reactions in the full pathway
| |
| − | * [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type:
| |
| − | ** '''9''' reactions found over '''10''' reactions in the full pathway
| |
| − | * [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type:
| |
| − | ** '''10''' reactions found over '''12''' reactions in the full pathway
| |
| | == Reconstruction information == | | == Reconstruction information == |
| − | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a |
| | == External links == | | == External links == |
| − | * RHEA: | + | * METANETX-RXN : MNXR121502 |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10751 10751]
| |
| | {{#set: direction=reversible}} | | {{#set: direction=reversible}} |
| − | {{#set: common-name=carbonic anhydrase|carbonate dehydratase}}
| + | {{#set: nb gene associated=1}} |
| − | {{#set: ec-number=ec-4.2.1.1}}
| + | {{#set: nb pathway associated=0}} |
| − | {{#set: nb gene associated=14}} | + | {{#set: reconstruction category=annotation}} |
| − | {{#set: nb pathway associated=9}} | + | {{#set: reconstruction tool=pathwaytools}} |
| − | {{#set: reconstruction category=annotation|orthology}} | |
| − | {{#set: reconstruction tool=pantograph|pathwaytools}} | |
| | {{#set: reconstruction comment=n.a}} | | {{#set: reconstruction comment=n.a}} |
| − | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} | + | {{#set: reconstruction source=saccharina_japonica_genome}} |
