Difference between revisions of "RXN-18210"

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(Created page with "Category:reaction == Reaction RXN0-5224 == * direction: ** reversible * common-name: ** carbonate dehydratase ** carbonic anhydrase * ec-number: ** [http://enzyme.expasy.o...")
(Created page with "Category:reaction == Reaction PYRAMKIN-RXN == * direction: ** left-to-right * common-name: ** pyridoxamine kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.35 ec-...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN0-5224 ==
+
== Reaction PYRAMKIN-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** carbonate dehydratase
+
** pyridoxamine kinase
−
** carbonic anhydrase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.2.1.1 ec-4.2.1.1]
+
** [http://enzyme.expasy.org/EC/2.7.1.35 ec-2.7.1.35]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[HCO3]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[PYRIDOXAMINE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PYRIDOXAMINE-5P]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ14436]]
−
* Gene: [[SJ18141]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ07765]]
+
* Gene: [[SJ08289]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ22175]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07762]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18140]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ18142]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21158]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ13238]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ17783]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ12311]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ18135]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ13240]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ07324]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07587]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum):
+
* [[PLPSAL-PWY]], pyridoxal 5'-phosphate salvage I:
−
** '''10''' reactions found over '''13''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWYQT-4429]], CO2 fixation into oxaloacetate (anaplerotic):
+
* [[PWY-7204]], pyridoxal 5'-phosphate salvage II (plants):
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''9''' reactions found over '''9''' reactions in the full pathway
−
* [[CYANCAT-PWY]], cyanate degradation:
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5744]], glyoxylate assimilation:
 
−
** '''4''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle:
 
−
** '''8''' reactions found over '''18''' reactions in the full pathway
 
−
* [[PWY-5743]], 3-hydroxypropanoate cycle:
 
−
** '''5''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-241]], C4 photosynthetic carbon assimilation cycle, NADP-ME type:
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type:
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type:
 
−
** '''10''' reactions found over '''12''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10751 10751]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25105 25105]
−
{{#set: direction=reversible}}
+
* LIGAND-RXN:
−
{{#set: common-name=carbonic anhydrase|carbonate dehydratase}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R02493 R02493]
−
{{#set: ec-number=ec-4.2.1.1}}
+
{{#set: direction=left-to-right}}
−
{{#set: nb gene associated=14}}
+
{{#set: common-name=pyridoxamine kinase}}
−
{{#set: nb pathway associated=9}}
+
{{#set: ec-number=ec-2.7.1.35}}
 +
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:01, 5 January 2021

Reaction PYRAMKIN-RXN

  • direction:
    • left-to-right
  • common-name:
    • pyridoxamine kinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PLPSAL-PWY, pyridoxal 5'-phosphate salvage I:
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7204, pyridoxal 5'-phosphate salvage II (plants):
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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