Difference between revisions of "RXN-18210"

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(Created page with "Category:reaction == Reaction PYRAMKIN-RXN == * direction: ** left-to-right * common-name: ** pyridoxamine kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.35 ec-...")
(Created page with "Category:reaction == Reaction GDPMANDEHYDRA-RXN == * direction: ** left-to-right * common-name: ** gdp-mannose 4,6-dehydratase * ec-number: ** [http://enzyme.expasy.org/EC...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PYRAMKIN-RXN ==
+
== Reaction GDPMANDEHYDRA-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** pyridoxamine kinase
+
** gdp-mannose 4,6-dehydratase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.1.35 ec-2.7.1.35]
+
** [http://enzyme.expasy.org/EC/4.2.1.47 ec-4.2.1.47]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[PYRIDOXAMINE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PYRIDOXAMINE-5P]][c]
+
* 1 [[GDP-MANNOSE]][c] '''=>''' 1 [[GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ14436]]
+
* Gene: [[SJ04008]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 16: Line 16:
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ08289]]
+
* Gene: [[SJ21655]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PLPSAL-PWY]], pyridoxal 5'-phosphate salvage I:
+
* [[PWY-5739]], GDP-D-perosamine biosynthesis:
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-7204]], pyridoxal 5'-phosphate salvage II (plants):
+
* [[PWY-7573]], GDP-mycosamine biosynthesis:
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5740]], GDP-L-colitose biosynthesis:
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-66]], GDP-L-fucose biosynthesis I (from GDP-D-mannose):
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[GDPRHAMSYN-PWY]], GDP-D-rhamnose biosynthesis:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5738]], GDP-6-deoxy-D-talose biosynthesis:
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25105 25105]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23821 23821]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02493 R02493]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00888 R00888]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q84439 Q84439]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=pyridoxamine kinase}}
+
{{#set: common-name=gdp-mannose 4,6-dehydratase}}
−
{{#set: ec-number=ec-2.7.1.35}}
+
{{#set: ec-number=ec-4.2.1.47}}
 
{{#set: nb gene associated=2}}
 
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=6}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:31, 5 January 2021

Reaction GDPMANDEHYDRA-RXN

  • direction:
    • left-to-right
  • common-name:
    • gdp-mannose 4,6-dehydratase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5739, GDP-D-perosamine biosynthesis:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7573, GDP-mycosamine biosynthesis:
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5740, GDP-L-colitose biosynthesis:
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-66, GDP-L-fucose biosynthesis I (from GDP-D-mannose):
    • 2 reactions found over 3 reactions in the full pathway
  • GDPRHAMSYN-PWY, GDP-D-rhamnose biosynthesis:
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5738, GDP-6-deoxy-D-talose biosynthesis:
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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