Difference between revisions of "RXN-1882"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.4.22.68-RXN 3.4.22.68-RXN] == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy...") |
(Created page with "Category:reaction == Reaction RXN-1882 == * direction: ** reversible * common-name: ** gdp-d-mannose 3'',5''-epimerase * ec-number: ** [http://enzyme.expasy.org/EC/5.1.3.1...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction | + | == Reaction RXN-1882 == |
* direction: | * direction: | ||
| − | ** | + | ** reversible |
| + | * common-name: | ||
| + | ** gdp-d-mannose 3'',5''-epimerase | ||
* ec-number: | * ec-number: | ||
| − | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/5.1.3.18 ec-5.1.3.18] |
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[GDP-MANNOSE]][c] '''<=>''' 1 [[GDP-L-GALACTOSE]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[SJ02713]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
| + | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| + | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
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== Pathway(s) == | == Pathway(s) == | ||
| + | * [[PWY-5115]], GDP-L-galactose biosynthesis: | ||
| + | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
| + | * [[PWY4FS-13]], extended VTC2 cycle: | ||
| + | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
| + | * [[PWY4FS-12]], VTC2 cycle: | ||
| + | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
| + | * [[PWY-882]], L-ascorbate biosynthesis I (plants, L-galactose pathway): | ||
| + | ** '''6''' reactions found over '''5''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| + | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| − | |||
== External links == | == External links == | ||
| − | {{#set: direction= | + | {{#set: direction=reversible}} |
| − | {{#set: ec-number=ec- | + | {{#set: common-name=gdp-d-mannose 3'',5''-epimerase}} |
| − | {{#set: nb gene associated= | + | {{#set: ec-number=ec-5.1.3.18}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb gene associated=1}} |
| + | {{#set: nb pathway associated=4}} | ||
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source= | + | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}} |
Latest revision as of 11:20, 18 March 2021
Contents
Reaction RXN-1882
- direction:
- reversible
- common-name:
- gdp-d-mannose 3,5-epimerase
- ec-number:
Reaction formula
- 1 GDP-MANNOSE[c] <=> 1 GDP-L-GALACTOSE[c]
Gene(s) associated with this reaction
- Gene: SJ02713
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-5115, GDP-L-galactose biosynthesis:
- 1 reactions found over 1 reactions in the full pathway
- PWY4FS-13, extended VTC2 cycle:
- 2 reactions found over 3 reactions in the full pathway
- PWY4FS-12, VTC2 cycle:
- 2 reactions found over 2 reactions in the full pathway
- PWY-882, L-ascorbate biosynthesis I (plants, L-galactose pathway):
- 6 reactions found over 5 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
