Difference between revisions of "RXN-1882"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROKAEMPFEROL-4-REDUCTASE-RXN DIHYDROKAEMPFEROL-4-REDUCTASE-RXN] == * direction: ** left-to-rig...")
(Created page with "Category:reaction == Reaction RXN-1882 == * direction: ** reversible * common-name: ** gdp-d-mannose 3'',5''-epimerase * ec-number: ** [http://enzyme.expasy.org/EC/5.1.3.1...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIHYDROKAEMPFEROL-4-REDUCTASE-RXN DIHYDROKAEMPFEROL-4-REDUCTASE-RXN] ==
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== Reaction RXN-1882 ==
 
* direction:
 
* direction:
−
** left-to-right
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** reversible
 +
* common-name:
 +
** gdp-d-mannose 3'',5''-epimerase
 
* ec-number:
 
* ec-number:
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** [http://enzyme.expasy.org/EC/1.1.1.219 ec-1.1.1.219]
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** [http://enzyme.expasy.org/EC/5.1.3.18 ec-5.1.3.18]
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[DIHYDROKAEMPFEROL-CMPD]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[LEUCOPELARGONIDIN-CMPD]][c] '''+''' 1 [[NADP]][c]
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* 1 [[GDP-MANNOSE]][c] '''<=>''' 1 [[GDP-L-GALACTOSE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21972]]
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* Gene: [[SJ02713]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ06064]]
 
−
** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ12213]]
 
−
** Category: [[orthology]]
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY1F-823]], leucopelargonidin and leucocyanidin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-823 PWY1F-823]
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* [[PWY-5115]], GDP-L-galactose biosynthesis:
−
** '''3''' reactions found over '''4''' reactions in the full pathway
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** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY4FS-13]], extended VTC2 cycle:
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY4FS-12]], VTC2 cycle:
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-882]], L-ascorbate biosynthesis I (plants, L-galactose pathway):
 +
** '''6''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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{{#set: direction=reversible}}
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* RHEA:
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{{#set: common-name=gdp-d-mannose 3'',5''-epimerase}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23019 23019]
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{{#set: ec-number=ec-5.1.3.18}}
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* LIGAND-RXN:
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{{#set: nb gene associated=1}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03123 R03123]
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{{#set: nb pathway associated=4}}
−
* UNIPROT:
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{{#set: reconstruction category=orthology|annotation}}
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** [http://www.uniprot.org/uniprot/P51102 P51102]
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{{#set: reconstruction tool=pantograph|pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P14720 P14720]
 
−
** [http://www.uniprot.org/uniprot/P14721 P14721]
 
−
** [http://www.uniprot.org/uniprot/P51106 P51106]
 
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** [http://www.uniprot.org/uniprot/P51105 P51105]
 
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** [http://www.uniprot.org/uniprot/P51107 P51107]
 
−
** [http://www.uniprot.org/uniprot/P73212 P73212]
 
−
** [http://www.uniprot.org/uniprot/O82105 O82105]
 
−
** [http://www.uniprot.org/uniprot/Q9SAN4 Q9SAN4]
 
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** [http://www.uniprot.org/uniprot/P93776 P93776]
 
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** [http://www.uniprot.org/uniprot/P93777 P93777]
 
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** [http://www.uniprot.org/uniprot/P94105 P94105]
 
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** [http://www.uniprot.org/uniprot/O22589 O22589]
 
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** [http://www.uniprot.org/uniprot/O22605 O22605]
 
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** [http://www.uniprot.org/uniprot/P51104 P51104]
 
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** [http://www.uniprot.org/uniprot/Q9ZNV0 Q9ZNV0]
 
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** [http://www.uniprot.org/uniprot/Q9SAY2 Q9SAY2]
 
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** [http://www.uniprot.org/uniprot/P93840 P93840]
 
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</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: ec-number=ec-1.1.1.219}}
 
−
{{#set: nb gene associated=3}}
 
−
{{#set: nb pathway associated=1}}
 
−
{{#set: reconstruction category=orthology}}
 
−
{{#set: reconstruction tool=pantograph}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}
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{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction RXN-1882

  • direction:
    • reversible
  • common-name:
    • gdp-d-mannose 3,5-epimerase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5115, GDP-L-galactose biosynthesis:
    • 1 reactions found over 1 reactions in the full pathway
  • PWY4FS-13, extended VTC2 cycle:
    • 2 reactions found over 3 reactions in the full pathway
  • PWY4FS-12, VTC2 cycle:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-882, L-ascorbate biosynthesis I (plants, L-galactose pathway):
    • 6 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-1882&oldid=141038"