Difference between revisions of "RXN-1961"

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(Created page with "Category:reaction == Reaction RXN-8629 == * direction: ** reversible * common-name: ** h-gcv-protein-(dihydrolipoyl)lysine:nad+ oxidoreductase * ec-number: ** [http://enzy...")
(Created page with "Category:reaction == Reaction RXN-1961 == * direction: ** left-to-right * common-name: ** trnaile-lysidine synthetase * ec-number: ** [http://enzyme.expasy.org/EC/6.3.4.19...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-8629 ==
+
== Reaction RXN-1961 ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** h-gcv-protein-(dihydrolipoyl)lysine:nad+ oxidoreductase
+
** trnaile-lysidine synthetase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.8.1.4 ec-1.8.1.4]
+
** [http://enzyme.expasy.org/EC/6.3.4.19 ec-6.3.4.19]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[PROTEIN-LIPOYLLYSINE]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[Cytidine-34-tRNAIle2]][c] '''+''' 1 [[LYS]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Lysidine-tRNA-Ile2]][c] '''+''' 1 [[PPI]][c] '''+''' 2 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ03718]]
+
* Gene: [[SJ22053]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ10661]]
+
* Gene: [[SJ20061]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ13629]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ06474]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[GLYCLEAV-PWY]], glycine cleavage:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
{{#set: direction=reversible}}
+
* METANETX-RXN : MNXR121606
−
{{#set: common-name=h-gcv-protein-(dihydrolipoyl)lysine:nad+ oxidoreductase}}
+
* RHEA:
−
{{#set: ec-number=ec-1.8.1.4}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=43745 43745]
−
{{#set: nb gene associated=4}}
+
* LIGAND-RXN:
−
{{#set: nb pathway associated=1}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R09597 R09597]
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: direction=left-to-right}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: common-name=trnaile-lysidine synthetase}}
 +
{{#set: ec-number=ec-6.3.4.19}}
 +
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=0}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:23, 18 March 2021

Reaction RXN-1961

  • direction:
    • left-to-right
  • common-name:
    • trnaile-lysidine synthetase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

  • METANETX-RXN : MNXR121606
  • RHEA:
  • LIGAND-RXN:





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