Difference between revisions of "RXN-2043"

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(Created page with "Category:reaction == Reaction RXN-13279-CPD-14916/NADP//CPD0-2106/NADPH/PROTON.39. == * direction: ** reversible == Reaction formula == * 1.0 CPD-14916[c] '''+''' 1.0...")
(Created page with "Category:reaction == Reaction UDPGLUCEPIM-RXN == * direction: ** reversible * common-name: ** udp-glucose 4-epimerase * ec-number: ** [http://enzyme.expasy.org/EC/5.1.3.2...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-13279-CPD-14916/NADP//CPD0-2106/NADPH/PROTON.39. ==
+
== Reaction UDPGLUCEPIM-RXN ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
 +
* common-name:
 +
** udp-glucose 4-epimerase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/5.1.3.2 ec-5.1.3.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1.0 [[CPD-14916]][c] '''+''' 1.0 [[NADP]][c] '''<=>''' 1.0 [[CPD0-2106]][c] '''+''' 1.0 [[NADPH]][c] '''+''' 1.0 [[PROTON]][c]
+
* 1 [[CPD-12575]][c] '''<=>''' 1 [[CPD-14553]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
 +
* Gene: [[SJ16452]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ19552]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ17935]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-6317]], D-galactose degradation I (Leloir pathway):
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7344]], UDP-&alpha;-D-galactose biosynthesis:
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[COLANSYN-PWY]], colanic acid building blocks biosynthesis:
 +
** '''6''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-6397]], mycolyl-arabinogalactan-peptidoglycan complex biosynthesis:
 +
** '''1''' reactions found over '''17''' reactions in the full pathway
 +
* [[PWY-7328]], superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis:
 +
** '''5''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY66-422]]:
 +
** '''5''' reactions found over '''n.a''' reactions in the full pathway
 +
* [[PWY-3821]], D-galactose detoxification:
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6527]], stachyose degradation:
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
+
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22171 22171]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00291 R00291]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P35673 P35673]
 +
** [http://www.uniprot.org/uniprot/P22715 P22715]
 +
** [http://www.uniprot.org/uniprot/P21977 P21977]
 +
** [http://www.uniprot.org/uniprot/P24325 P24325]
 +
** [http://www.uniprot.org/uniprot/Q9CE66 Q9CE66]
 +
** [http://www.uniprot.org/uniprot/Q57664 Q57664]
 +
** [http://www.uniprot.org/uniprot/P55180 P55180]
 +
** [http://www.uniprot.org/uniprot/Q9PNG3 Q9PNG3]
 +
** [http://www.uniprot.org/uniprot/P56997 P56997]
 +
** [http://www.uniprot.org/uniprot/Q59083 Q59083]
 +
** [http://www.uniprot.org/uniprot/Q44016 Q44016]
 +
** [http://www.uniprot.org/uniprot/Q45291 Q45291]
 +
** [http://www.uniprot.org/uniprot/P96995 P96995]
 +
** [http://www.uniprot.org/uniprot/P45602 P45602]
 +
** [http://www.uniprot.org/uniprot/P18645 P18645]
 +
** [http://www.uniprot.org/uniprot/P26503 P26503]
 +
** [http://www.uniprot.org/uniprot/P40801 P40801]
 +
** [http://www.uniprot.org/uniprot/Q05026 Q05026]
 +
** [http://www.uniprot.org/uniprot/P56985 P56985]
 +
** [http://www.uniprot.org/uniprot/Q51148 Q51148]
 +
** [http://www.uniprot.org/uniprot/Q56093 Q56093]
 +
** [http://www.uniprot.org/uniprot/Q42605 Q42605]
 +
** [http://www.uniprot.org/uniprot/Q60109 Q60109]
 +
** [http://www.uniprot.org/uniprot/P72903 P72903]
 +
** [http://www.uniprot.org/uniprot/P72915 P72915]
 +
** [http://www.uniprot.org/uniprot/O66256 O66256]
 +
** [http://www.uniprot.org/uniprot/O64749 O64749]
 +
** [http://www.uniprot.org/uniprot/Q9SN58 Q9SN58]
 +
** [http://www.uniprot.org/uniprot/Q8VZ26 Q8VZ26]
 +
** [http://www.uniprot.org/uniprot/Q43070 Q43070]
 +
** [http://www.uniprot.org/uniprot/Q9T0A7 Q9T0A7]
 +
** [http://www.uniprot.org/uniprot/O65780 O65780]
 +
** [http://www.uniprot.org/uniprot/O65781 O65781]
 +
** [http://www.uniprot.org/uniprot/Q9RMC0 Q9RMC0]
 +
** [http://www.uniprot.org/uniprot/P04397 P04397]
 +
** [http://www.uniprot.org/uniprot/P09147 P09147]
 +
** [http://www.uniprot.org/uniprot/P13226 P13226]
 +
** [http://www.uniprot.org/uniprot/P09609 P09609]
 +
</div>
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: nb gene associated=0}}
+
{{#set: common-name=udp-glucose 4-epimerase}}
−
{{#set: nb pathway associated=0}}
+
{{#set: ec-number=ec-5.1.3.2}}
−
{{#set: reconstruction category=gap-filling}}
+
{{#set: nb gene associated=3}}
−
{{#set: reconstruction tool=meneco}}
+
{{#set: nb pathway associated=8}}
−
{{#set: reconstruction comment=added for gapfilling}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:02, 5 January 2021

Reaction UDPGLUCEPIM-RXN

  • direction:
    • reversible
  • common-name:
    • udp-glucose 4-epimerase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6317, D-galactose degradation I (Leloir pathway):
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7344, UDP-α-D-galactose biosynthesis:
    • 1 reactions found over 1 reactions in the full pathway
  • COLANSYN-PWY, colanic acid building blocks biosynthesis:
    • 6 reactions found over 1 reactions in the full pathway
  • PWY-6397, mycolyl-arabinogalactan-peptidoglycan complex biosynthesis:
    • 1 reactions found over 17 reactions in the full pathway
  • PWY-7328, superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis:
    • 5 reactions found over 2 reactions in the full pathway
  • PWY66-422:
    • 5 reactions found over n.a reactions in the full pathway
  • PWY-3821, D-galactose detoxification:
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6527, stachyose degradation:
    • 7 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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