Difference between revisions of "RXN-2043"

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(Created page with "Category:reaction == Reaction UDPGLUCEPIM-RXN == * direction: ** reversible * common-name: ** udp-glucose 4-epimerase * ec-number: ** [http://enzyme.expasy.org/EC/5.1.3.2...")
(Created page with "Category:reaction == Reaction THRESYN-RXN == * direction: ** left-to-right * common-name: ** threonine synthase * ec-number: ** [http://enzyme.expasy.org/EC/4.2.3.1 ec-4.2...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction UDPGLUCEPIM-RXN ==
+
== Reaction THRESYN-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** udp-glucose 4-epimerase
+
** threonine synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/5.1.3.2 ec-5.1.3.2]
+
** [http://enzyme.expasy.org/EC/4.2.3.1 ec-4.2.3.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-12575]][c] '''<=>''' 1 [[CPD-14553]][c]
+
* 1 [[O-PHOSPHO-L-HOMOSERINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[THR]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ16452]]
+
* Gene: [[SJ11569]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ19552]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ17935]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6317]], D-galactose degradation I (Leloir pathway):
+
* [[HOMOSER-THRESYN-PWY]], L-threonine biosynthesis:
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-7344]], UDP-&alpha;-D-galactose biosynthesis:
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[COLANSYN-PWY]], colanic acid building blocks biosynthesis:
 
−
** '''6''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-6397]], mycolyl-arabinogalactan-peptidoglycan complex biosynthesis:
 
−
** '''1''' reactions found over '''17''' reactions in the full pathway
 
−
* [[PWY-7328]], superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis:
 
−
** '''5''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY66-422]]:
 
−
** '''5''' reactions found over '''n.a''' reactions in the full pathway
 
−
* [[PWY-3821]], D-galactose detoxification:
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6527]], stachyose degradation:
 
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
Line 47: Line 24:
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22171 22171]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10841 10841]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00291 R00291]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01466 R01466]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P35673 P35673]
+
** [http://www.uniprot.org/uniprot/P04990 P04990]
−
** [http://www.uniprot.org/uniprot/P22715 P22715]
+
** [http://www.uniprot.org/uniprot/Q9Y9K2 Q9Y9K2]
−
** [http://www.uniprot.org/uniprot/P21977 P21977]
+
** [http://www.uniprot.org/uniprot/O28953 O28953]
−
** [http://www.uniprot.org/uniprot/P24325 P24325]
+
** [http://www.uniprot.org/uniprot/P66902 P66902]
−
** [http://www.uniprot.org/uniprot/Q9CE66 Q9CE66]
+
** [http://www.uniprot.org/uniprot/O59293 O59293]
−
** [http://www.uniprot.org/uniprot/Q57664 Q57664]
+
** [http://www.uniprot.org/uniprot/O66864 O66864]
−
** [http://www.uniprot.org/uniprot/P55180 P55180]
+
** [http://www.uniprot.org/uniprot/Q9PPA8 Q9PPA8]
−
** [http://www.uniprot.org/uniprot/Q9PNG3 Q9PNG3]
+
** [http://www.uniprot.org/uniprot/O58587 O58587]
−
** [http://www.uniprot.org/uniprot/P56997 P56997]
+
** [http://www.uniprot.org/uniprot/Q9V0P1 Q9V0P1]
−
** [http://www.uniprot.org/uniprot/Q59083 Q59083]
+
** [http://www.uniprot.org/uniprot/Q9V190 Q9V190]
−
** [http://www.uniprot.org/uniprot/Q44016 Q44016]
+
** [http://www.uniprot.org/uniprot/O26354 O26354]
−
** [http://www.uniprot.org/uniprot/Q45291 Q45291]
+
** [http://www.uniprot.org/uniprot/O29700 O29700]
−
** [http://www.uniprot.org/uniprot/P96995 P96995]
+
** [http://www.uniprot.org/uniprot/Q9WZ16 Q9WZ16]
−
** [http://www.uniprot.org/uniprot/P45602 P45602]
+
** [http://www.uniprot.org/uniprot/Q9UZV8 Q9UZV8]
−
** [http://www.uniprot.org/uniprot/P18645 P18645]
+
** [http://www.uniprot.org/uniprot/Q9JU91 Q9JU91]
−
** [http://www.uniprot.org/uniprot/P26503 P26503]
+
** [http://www.uniprot.org/uniprot/Q9CDV8 Q9CDV8]
−
** [http://www.uniprot.org/uniprot/P40801 P40801]
+
** [http://www.uniprot.org/uniprot/P44503 P44503]
−
** [http://www.uniprot.org/uniprot/Q05026 Q05026]
+
** [http://www.uniprot.org/uniprot/Q58860 Q58860]
−
** [http://www.uniprot.org/uniprot/P56985 P56985]
+
** [http://www.uniprot.org/uniprot/O66740 O66740]
−
** [http://www.uniprot.org/uniprot/Q51148 Q51148]
+
** [http://www.uniprot.org/uniprot/O50114 O50114]
−
** [http://www.uniprot.org/uniprot/Q56093 Q56093]
+
** [http://www.uniprot.org/uniprot/Q9YBW2 Q9YBW2]
−
** [http://www.uniprot.org/uniprot/Q42605 Q42605]
+
** [http://www.uniprot.org/uniprot/P23669 P23669]
−
** [http://www.uniprot.org/uniprot/Q60109 Q60109]
+
** [http://www.uniprot.org/uniprot/P27735 P27735]
−
** [http://www.uniprot.org/uniprot/P72903 P72903]
+
** [http://www.uniprot.org/uniprot/Q00063 Q00063]
−
** [http://www.uniprot.org/uniprot/P72915 P72915]
+
** [http://www.uniprot.org/uniprot/P74193 P74193]
−
** [http://www.uniprot.org/uniprot/O66256 O66256]
+
** [http://www.uniprot.org/uniprot/P73711 P73711]
−
** [http://www.uniprot.org/uniprot/O64749 O64749]
+
** [http://www.uniprot.org/uniprot/P16120 P16120]
−
** [http://www.uniprot.org/uniprot/Q9SN58 Q9SN58]
+
** [http://www.uniprot.org/uniprot/P00934 P00934]
−
** [http://www.uniprot.org/uniprot/Q8VZ26 Q8VZ26]
+
** [http://www.uniprot.org/uniprot/P29363 P29363]
−
** [http://www.uniprot.org/uniprot/Q43070 Q43070]
+
** [http://www.uniprot.org/uniprot/Q9S7B5 Q9S7B5]
−
** [http://www.uniprot.org/uniprot/Q9T0A7 Q9T0A7]
+
** [http://www.uniprot.org/uniprot/P45837 P45837]
−
** [http://www.uniprot.org/uniprot/O65780 O65780]
+
** [http://www.uniprot.org/uniprot/Q42598 Q42598]
−
** [http://www.uniprot.org/uniprot/O65781 O65781]
 
−
** [http://www.uniprot.org/uniprot/Q9RMC0 Q9RMC0]
 
−
** [http://www.uniprot.org/uniprot/P04397 P04397]
 
−
** [http://www.uniprot.org/uniprot/P09147 P09147]
 
−
** [http://www.uniprot.org/uniprot/P13226 P13226]
 
−
** [http://www.uniprot.org/uniprot/P09609 P09609]
 
 
</div>
 
</div>
−
{{#set: direction=reversible}}
+
{{#set: direction=left-to-right}}
−
{{#set: common-name=udp-glucose 4-epimerase}}
+
{{#set: common-name=threonine synthase}}
−
{{#set: ec-number=ec-5.1.3.2}}
+
{{#set: ec-number=ec-4.2.3.1}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=8}}
+
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:32, 5 January 2021

Reaction THRESYN-RXN

  • direction:
    • left-to-right
  • common-name:
    • threonine synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • HOMOSER-THRESYN-PWY, L-threonine biosynthesis:
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-2043&oldid=75497"