Difference between revisions of "RXN-21829"

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(Created page with "Category:reaction == Reaction 2OXOGLUTDECARB-RXN == * direction: ** left-to-right * common-name: ** 2-oxoglutarate decarboxylase * ec-number: ** [http://enzyme.expasy.org/...")
(Created page with "Category:reaction == Reaction RXN-21829 == * ec-number: ** [http://enzyme.expasy.org/EC/1.14.18.10 ec-1.14.18.10] * direction: ** left-to-right == Reaction formula == * 1...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction 2OXOGLUTDECARB-RXN ==
+
== Reaction RXN-21829 ==
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/1.14.18.10 ec-1.14.18.10]
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** 2-oxoglutarate decarboxylase
 
−
* ec-number:
 
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** [http://enzyme.expasy.org/EC/1.2.4.2 ec-1.2.4.2]
 
−
* synonymous:
 
−
** oxoglutarate decarboxylase
 
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** 2-oxoglutarate decarboxylation
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[Oxo-glutarate-dehydrogenase-lipoyl]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[Oxo-glutarate-dehydro-suc-DH-lipoyl]][c]
+
* 1 [[CYCLOARTENOL]][c] '''+''' 6 [[FERROCYTOCHROME-B5]][c] '''+''' 3 [[OXYGEN-MOLECULE]][c] '''+''' 5 [[PROTON]][c] '''=>''' 1 [[CPD-23708]][c] '''+''' 6 [[FERRICYTOCHROME-B5]][c] '''+''' 4 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21701]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ13629]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ06474]]
 
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** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY66-398]], TCA cycle III (animals):
 
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** '''10''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-5084]], 2-oxoglutarate decarboxylation to succinyl-CoA:
 
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** '''3''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[manual]]; source: [[reactions_add_sjap]]; tool: [[curation]]; comment: curation sterols (girard et al.)
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
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* RHEA:
+
{{#set: ec-number=ec-1.14.18.10}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12189 12189]
 
−
* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P23129 P23129]
 
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** [http://www.uniprot.org/uniprot/Q02218 Q02218]
 
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** [http://www.uniprot.org/uniprot/Q60597 Q60597]
 
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** [http://www.uniprot.org/uniprot/Q9JRJ8 Q9JRJ8]
 
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** [http://www.uniprot.org/uniprot/P20967 P20967]
 
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** [http://www.uniprot.org/uniprot/P0AFG3 P0AFG3]
 
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** [http://www.uniprot.org/uniprot/P20707 P20707]
 
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** [http://www.uniprot.org/uniprot/P51056 P51056]
 
−
** [http://www.uniprot.org/uniprot/Q56600 Q56600]
 
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** [http://www.uniprot.org/uniprot/O49541 O49541]
 
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** [http://www.uniprot.org/uniprot/Q59106 Q59106]
 
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** [http://www.uniprot.org/uniprot/Q9M2T8 Q9M2T8]
 
−
** [http://www.uniprot.org/uniprot/Q9ZRQ2 Q9ZRQ2]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=2-oxoglutarate decarboxylase}}
+
{{#set: nb gene associated=0}}
−
{{#set: ec-number=ec-1.2.4.2}}
+
{{#set: nb pathway associated=0}}
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{{#set: synonymous=2-oxoglutarate decarboxylation|oxoglutarate decarboxylase}}
+
{{#set: reconstruction category=manual}}
−
{{#set: nb gene associated=3}}
+
{{#set: reconstruction tool=curation}}
−
{{#set: nb pathway associated=2}}
+
{{#set: reconstruction comment=curation sterols (girard et al.)}}
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{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction source=reactions_add_sjap}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Latest revision as of 11:20, 18 March 2021

Reaction RXN-21829

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-21829&oldid=141282"