Difference between revisions of "RXN-21830"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIPHTINE--AMMONIA-LIGASE-RXN DIPHTINE--AMMONIA-LIGASE-RXN] == * direction: ** left-to-right * commo...") |
(Created page with "Category:reaction == Reaction HOMOCYSMETB12-RXN == * direction: ** left-to-right * common-name: ** methionine synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.1.1.1...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction | + | == Reaction HOMOCYSMETB12-RXN == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** methionine synthase |
* ec-number: | * ec-number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/2.1.1.13 ec-2.1.1.13] |
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[5-METHYL-THF-GLU-N]][c] '''+''' 1 [[HOMO-CYS]][c] '''=>''' 1 [[MET]][c] '''+''' 1 [[THF-GLU-N]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | * Gene: [[SJ03226]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[PWY- | + | * [[HOMOSER-METSYN-PWY]], L-methionine biosynthesis I: |
+ | ** '''4''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[HSERMETANA-PWY]], L-methionine biosynthesis III: | ||
+ | ** '''3''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-3841]], folate transformations II (plants): | ||
+ | ** '''9''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[1CMET2-PWY]], folate transformations III (E. coli): | ||
+ | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[ADENOSYLHOMOCYSCAT-PWY]], L-methionine salvage from L-homocysteine: | ||
** '''3''' reactions found over '''3''' reactions in the full pathway | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
− | * [[PWY- | + | * [[PWY-2201]], folate transformations I: |
− | ** ''' | + | ** '''9''' reactions found over '''10''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11173 11173] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00946 R00946] |
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/Q57195 Q57195] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9RVQ6 Q9RVQ6] | ||
+ | ** [http://www.uniprot.org/uniprot/O33259 O33259] | ||
+ | ** [http://www.uniprot.org/uniprot/Q55786 Q55786] | ||
+ | ** [http://www.uniprot.org/uniprot/Q09582 Q09582] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9Z2Q4 Q9Z2Q4] | ||
+ | ** [http://www.uniprot.org/uniprot/P13009 P13009] | ||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=methionine synthase}} |
− | {{#set: ec-number=ec- | + | {{#set: ec-number=ec-2.1.1.13}} |
{{#set: nb gene associated=1}} | {{#set: nb gene associated=1}} | ||
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=6}} |
− | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=annotation|orthology}} |
− | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 20:38, 18 December 2020
Contents
Reaction HOMOCYSMETB12-RXN
- direction:
- left-to-right
- common-name:
- methionine synthase
- ec-number:
Reaction formula
- 1 5-METHYL-THF-GLU-N[c] + 1 HOMO-CYS[c] => 1 MET[c] + 1 THF-GLU-N[c]
Gene(s) associated with this reaction
- Gene: SJ03226
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- HOMOSER-METSYN-PWY, L-methionine biosynthesis I:
- 4 reactions found over 7 reactions in the full pathway
- HSERMETANA-PWY, L-methionine biosynthesis III:
- 3 reactions found over 2 reactions in the full pathway
- PWY-3841, folate transformations II (plants):
- 9 reactions found over 11 reactions in the full pathway
- 1CMET2-PWY, folate transformations III (E. coli):
- 8 reactions found over 9 reactions in the full pathway
- ADENOSYLHOMOCYSCAT-PWY, L-methionine salvage from L-homocysteine:
- 3 reactions found over 3 reactions in the full pathway
- PWY-2201, folate transformations I:
- 9 reactions found over 10 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
External links