Difference between revisions of "RXN-21831"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-4401 RXN0-4401] == * direction: ** left-to-right * common-name: ** nadh pyrophosphatase ** nad...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSGLYPHOS-RXN PHOSGLYPHOS-RXN] == * direction: ** reversible * common-name: ** phosphoglycerate k...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-4401 RXN0-4401] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSGLYPHOS-RXN PHOSGLYPHOS-RXN] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** nadh pyrophosphatase
+
** phosphoglycerate kinase
−
** nad+ diphosphatase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/3.6.1.22 ec-3.6.1.22]
+
** [http://enzyme.expasy.org/EC/2.7.2.3 ec-2.7.2.3]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[NADH]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[NMNH]][c] '''+''' 2 [[PROTON]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[G3P]][c] '''<=>''' 1 [[ADP]][c] '''+''' 1 [[DPG]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ19893]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ15992]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ22529]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ05024]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ19894]]
+
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ15991]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ18020]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ15971]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10780]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
 +
** '''12''' reactions found over '''13''' reactions in the full pathway
 +
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
 +
** '''12''' reactions found over '''15''' reactions in the full pathway
 +
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
 +
** '''12''' reactions found over '''13''' reactions in the full pathway
 +
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
 +
** '''16''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003]
 +
** '''8''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
 +
** '''10''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6886 PWY-6886]
 +
** '''8''' reactions found over '''5''' reactions in the full pathway
 +
* [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis): [http://metacyc.org/META/NEW-IMAGE?object=SUCSYN-PWY SUCSYN-PWY]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
</div>
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=48869 48869]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14804 14804]
−
{{#set: direction=left-to-right}}
+
* LIGAND-RXN:
−
{{#set: common-name=nad+ diphosphatase|nadh pyrophosphatase}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01512 R01512]
−
{{#set: ec-number=ec-3.6.1.22}}
+
* UNIPROT:
−
{{#set: nb gene associated=3}}
+
** [http://www.uniprot.org/uniprot/P11977 P11977]
−
{{#set: nb pathway associated=0}}
+
** [http://www.uniprot.org/uniprot/P09411 P09411]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/P09041 P09041]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/P07205 P07205]
 +
** [http://www.uniprot.org/uniprot/P16617 P16617]
 +
** [http://www.uniprot.org/uniprot/Q37743 Q37743]
 +
** [http://www.uniprot.org/uniprot/Q58058 Q58058]
 +
** [http://www.uniprot.org/uniprot/P56154 P56154]
 +
** [http://www.uniprot.org/uniprot/O29119 O29119]
 +
** [http://www.uniprot.org/uniprot/Q01655 Q01655]
 +
** [http://www.uniprot.org/uniprot/Q9URB3 Q9URB3]
 +
** [http://www.uniprot.org/uniprot/P47542 P47542]
 +
** [http://www.uniprot.org/uniprot/O27121 O27121]
 +
** [http://www.uniprot.org/uniprot/Q9PMQ5 Q9PMQ5]
 +
** [http://www.uniprot.org/uniprot/P40924 P40924]
 +
** [http://www.uniprot.org/uniprot/P43726 P43726]
 +
** [http://www.uniprot.org/uniprot/O66519 O66519]
 +
** [http://www.uniprot.org/uniprot/Q9JWS8 Q9JWS8]
 +
** [http://www.uniprot.org/uniprot/Q9CIW1 Q9CIW1]
 +
** [http://www.uniprot.org/uniprot/P36204 P36204]
 +
** [http://www.uniprot.org/uniprot/Q59181 Q59181]
 +
** [http://www.uniprot.org/uniprot/P50319 P50319]
 +
** [http://www.uniprot.org/uniprot/P50310 P50310]
 +
** [http://www.uniprot.org/uniprot/P51903 P51903]
 +
** [http://www.uniprot.org/uniprot/P18912 P18912]
 +
** [http://www.uniprot.org/uniprot/P41757 P41757]
 +
** [http://www.uniprot.org/uniprot/P27362 P27362]
 +
** [http://www.uniprot.org/uniprot/P24269 P24269]
 +
** [http://www.uniprot.org/uniprot/P00560 P00560]
 +
** [http://www.uniprot.org/uniprot/P25055 P25055]
 +
** [http://www.uniprot.org/uniprot/Q01604 Q01604]
 +
** [http://www.uniprot.org/uniprot/P00558 P00558]
 +
** [http://www.uniprot.org/uniprot/P07377 P07377]
 +
** [http://www.uniprot.org/uniprot/P07378 P07378]
 +
** [http://www.uniprot.org/uniprot/P14828 P14828]
 +
** [http://www.uniprot.org/uniprot/P09404 P09404]
 +
** [http://www.uniprot.org/uniprot/P29408 P29408]
 +
** [http://www.uniprot.org/uniprot/P20972 P20972]
 +
** [http://www.uniprot.org/uniprot/P20971 P20971]
 +
** [http://www.uniprot.org/uniprot/P24590 P24590]
 +
** [http://www.uniprot.org/uniprot/P29409 P29409]
 +
** [http://www.uniprot.org/uniprot/P33161 P33161]
 +
** [http://www.uniprot.org/uniprot/P29405 P29405]
 +
** [http://www.uniprot.org/uniprot/P50317 P50317]
 +
** [http://www.uniprot.org/uniprot/P50315 P50315]
 +
** [http://www.uniprot.org/uniprot/P29407 P29407]
 +
** [http://www.uniprot.org/uniprot/P61884 P61884]
 +
** [http://www.uniprot.org/uniprot/Q42542 Q42542]
 +
** [http://www.uniprot.org/uniprot/P50318 P50318]
 +
** [http://www.uniprot.org/uniprot/P46712 P46712]
 +
** [http://www.uniprot.org/uniprot/P78018 P78018]
 +
** [http://www.uniprot.org/uniprot/Q49073 Q49073]
 +
** [http://www.uniprot.org/uniprot/Q42961 Q42961]
 +
** [http://www.uniprot.org/uniprot/Q42962 Q42962]
 +
** [http://www.uniprot.org/uniprot/O81394 O81394]
 +
** [http://www.uniprot.org/uniprot/P41758 P41758]
 +
** [http://www.uniprot.org/uniprot/O32756 O32756]
 +
** [http://www.uniprot.org/uniprot/P38667 P38667]
 +
** [http://www.uniprot.org/uniprot/P08966 P08966]
 +
** [http://www.uniprot.org/uniprot/P08967 P08967]
 +
** [http://www.uniprot.org/uniprot/P0A799 P0A799]
 +
** [http://www.uniprot.org/uniprot/P09188 P09188]
 +
** [http://www.uniprot.org/uniprot/P14228 P14228]
 +
** [http://www.uniprot.org/uniprot/P08891 P08891]
 +
** [http://www.uniprot.org/uniprot/P08892 P08892]
 +
** [http://www.uniprot.org/uniprot/P08893 P08893]
 +
** [http://www.uniprot.org/uniprot/P12782 P12782]
 +
** [http://www.uniprot.org/uniprot/P12783 P12783]
 +
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=phosphoglycerate kinase}}
 +
{{#set: ec-number=ec-2.7.2.3}}
 +
{{#set: nb gene associated=6}}
 +
{{#set: nb pathway associated=14}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 14:25, 26 August 2019

Reaction PHOSGLYPHOS-RXN

  • direction:
    • reversible
  • common-name:
    • phosphoglycerate kinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY66-399, gluconeogenesis III: PWY66-399
    • 11 reactions found over 12 reactions in the full pathway
  • GLUCONEO-PWY, gluconeogenesis I: GLUCONEO-PWY
    • 12 reactions found over 13 reactions in the full pathway
  • P124-PWY, Bifidobacterium shunt: P124-PWY
    • 12 reactions found over 15 reactions in the full pathway
  • CALVIN-PWY, Calvin-Benson-Bassham cycle: CALVIN-PWY
    • 12 reactions found over 13 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle): P185-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • P122-PWY, heterolactic fermentation: P122-PWY
    • 16 reactions found over 18 reactions in the full pathway
  • PWY-5484, glycolysis II (from fructose 6-phosphate): PWY-5484
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-1042, glycolysis IV (plant cytosol): PWY-1042
    • 9 reactions found over 10 reactions in the full pathway
  • GLYCOLYSIS, glycolysis I (from glucose 6-phosphate): GLYCOLYSIS
    • 11 reactions found over 12 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY, glycolysis III (from glucose): ANAGLYCOLYSIS-PWY
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-7003, glycerol degradation to butanol: PWY-7003
    • 8 reactions found over 6 reactions in the full pathway
  • PWY-6901, superpathway of glucose and xylose degradation: PWY-6901
    • 10 reactions found over 8 reactions in the full pathway
  • PWY-6886, 1-butanol autotrophic biosynthesis (engineered): PWY-6886
    • 8 reactions found over 5 reactions in the full pathway
  • SUCSYN-PWY, sucrose biosynthesis I (from photosynthesis): SUCSYN-PWY
    • 6 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-21831&oldid=22847"