Difference between revisions of "RXN-2464"

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(Created page with "Category:reaction == Reaction RXN-11370 == * direction: ** left-to-right * common-name: ** diphthine synthase == Reaction formula == * 1 2-3-CARBOXY-3-AMINOPROPYL-L-HIST...")
(Created page with "Category:reaction == Reaction 4.2.1.58-RXN == <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> * direction: ** left-to-right * commo...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-11370 ==
+
== Reaction 4.2.1.58-RXN ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** diphthine synthase
+
** (3r)-3-hydroxybutanoyl-[acyl-carrier-protein] hydratase
 +
** fatty acid synthase
 +
** (3r)-3-hydroxybutanoyl-[acyl-carrier protein] dehydratase
 +
* ec-number:
 +
** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/4.2.1.59 ec-4.2.1.59]
 +
* synonymous:
 +
** (3r)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase (but-2-enoyl-[acyl-carrier protein]-forming)
 +
** crotonoyl-[acyl-carrier-protein] hydratase
 +
** &beta;-hydroxybutyryl acyl carrier protein dehydrase
 +
** 3-hydroxybutyryl acyl carrier protein dehydratase
 +
** enoyl acyl carrier protein hydrase
 +
** (3r)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase
 +
** crotonyl acyl carrier protein hydratase
 +
** &beta;-hydroxybutyryl acyl carrier protein (acp) dehydrase
 +
** &beta;-hydroxybutyryl acyl carrier  protein dehydrase
 +
</div>
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-3-CARBOXY-3-AMINOPROPYL-L-HISTIDINE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[2-3-CARBOXY-3-METHYLAMMONIOPROPYL-L-]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[Beta-3-hydroxybutyryl-ACPs]][c] '''=>''' 1 [[Crotonyl-ACPs]][c] '''+''' 1 [[WATER]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ08595]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* Gene: [[SJ11672]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ19629]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ00320]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04443]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10624]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ15983]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ17743]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10275]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
* Gene: [[SJ03883]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ00613]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ13014]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06617]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ18059]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06616]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06944]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04769]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
</div>
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plant cytoplasm):
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-5994]], palmitate biosynthesis (animals and fungi, cytoplasm):
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast):
 +
** '''7''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20146 20146]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q58670 Q58670]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04481 R04481]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04428 R04428]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=diphthine synthase}}
+
{{#set: common-name=(3r)-3-hydroxybutanoyl-[acyl-carrier-protein] hydratase|fatty acid synthase|(3r)-3-hydroxybutanoyl-[acyl-carrier protein] dehydratase}}
−
{{#set: nb gene associated=1}}
+
{{#set: ec-number=ec-4.2.1.59|ec-2.3.1.86|ec-2.3.1.85}}
−
{{#set: nb pathway associated=0}}
+
{{#set: synonymous=&beta;-hydroxybutyryl acyl carrier protein (acp) dehydrase|crotonoyl-[acyl-carrier-protein] hydratase|&beta;-hydroxybutyryl acyl carrier  protein dehydrase|3-hydroxybutyryl acyl carrier protein dehydratase|(3r)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase (but-2-enoyl-[acyl-carrier protein]-forming)|enoyl acyl carrier protein hydrase|(3r)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase|&beta;-hydroxybutyryl acyl carrier protein dehydrase|crotonyl acyl carrier protein hydratase}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: nb gene associated=16}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: nb pathway associated=3}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 11:23, 15 January 2021

Reaction 4.2.1.58-RXN

  • direction:
    • left-to-right
  • common-name:
    • (3r)-3-hydroxybutanoyl-[acyl-carrier-protein] hydratase
    • fatty acid synthase
    • (3r)-3-hydroxybutanoyl-[acyl-carrier protein] dehydratase
  • ec-number:
  • synonymous:
    • (3r)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase (but-2-enoyl-[acyl-carrier protein]-forming)
    • crotonoyl-[acyl-carrier-protein] hydratase
    • β-hydroxybutyryl acyl carrier protein dehydrase
    • 3-hydroxybutyryl acyl carrier protein dehydratase
    • enoyl acyl carrier protein hydrase
    • (3r)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase
    • crotonyl acyl carrier protein hydratase
    • β-hydroxybutyryl acyl carrier protein (acp) dehydrase
    • β-hydroxybutyryl acyl carrier protein dehydrase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5971, palmitate biosynthesis II (bacteria and plant cytoplasm):
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-5994, palmitate biosynthesis (animals and fungi, cytoplasm):
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-7388, octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast):
    • 7 reactions found over 11 reactions in the full pathway

Reconstruction information

External links

  • Property "Common-name" (as page type) with input value "(3r)-3-hydroxybutanoyl-[acyl-carrier-protein] hydratase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Common-name" (as page type) with input value "(3r)-3-hydroxybutanoyl-[acyl-carrier protein] dehydratase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Synonymous" (as page type) with input value "crotonoyl-[acyl-carrier-protein] hydratase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Synonymous" (as page type) with input value "(3r)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase (but-2-enoyl-[acyl-carrier protein]-forming)" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
  • Property "Synonymous" (as page type) with input value "(3r)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




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