Difference between revisions of "RXN-2464"

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(Created page with "Category:reaction == Reaction RXN-10661 == * direction: ** left-to-right * common-name: ** palmitoleoyl-[acp]:nad+ oxidoreductase * ec-number: ** [http://enzyme.expasy.org...")
(Created page with "Category:reaction == Reaction RXN-2464 == * direction: ** reversible * common-name: ** 4-hydroxy-4-methyl-2-oxoglutarate aldolase * ec-number: ** [http://enzyme.expasy.org...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-10661 ==
+
== Reaction RXN-2464 ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** palmitoleoyl-[acp]:nad+ oxidoreductase
+
** 4-hydroxy-4-methyl-2-oxoglutarate aldolase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.3.1.9 ec-1.3.1.9]
+
** [http://enzyme.expasy.org/EC/4.1.3.17 ec-4.1.3.17]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Trans-D3-cis-D9-hexadecenoyl-ACPs]][c] '''=>''' 1 [[NAD]][c] '''+''' 1 [[Palmitoleoyl-ACPs]][c]
+
* 1 [[4-OH-4-ACETYL-2-OXOGLUTARATE]][c] '''<=>''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[PYRUVATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ00320]]
+
* Gene: [[SJ13180]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ03883]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6282]], palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate):
+
* [[P184-PWY]], protocatechuate degradation I (meta-cleavage pathway):
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''2''' reactions found over '''8''' reactions in the full pathway
 +
* [[GALLATE-DEGRADATION-II-PWY]], gallate degradation I:
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[METHYLGALLATE-DEGRADATION-PWY]], methylgallate degradation:
 +
** '''2''' reactions found over '''6''' reactions in the full pathway
 +
* [[GALLATE-DEGRADATION-I-PWY]], gallate degradation II:
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
{{#set: direction=left-to-right}}
+
* METANETX-RXN : MNXR106486
−
{{#set: common-name=palmitoleoyl-[acp]:nad+ oxidoreductase}}
+
* RHEA:
−
{{#set: ec-number=ec-1.3.1.9}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28938 28938]
−
{{#set: nb gene associated=2}}
+
* LIGAND-RXN:
−
{{#set: nb pathway associated=1}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00350 R00350]
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: direction=reversible}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: common-name=4-hydroxy-4-methyl-2-oxoglutarate aldolase}}
 +
{{#set: ec-number=ec-4.1.3.17}}
 +
{{#set: nb gene associated=1}}
 +
{{#set: nb pathway associated=4}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Latest revision as of 11:20, 18 March 2021

Reaction RXN-2464

  • direction:
    • reversible
  • common-name:
    • 4-hydroxy-4-methyl-2-oxoglutarate aldolase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • P184-PWY, protocatechuate degradation I (meta-cleavage pathway):
    • 2 reactions found over 8 reactions in the full pathway
  • GALLATE-DEGRADATION-II-PWY, gallate degradation I:
    • 1 reactions found over 4 reactions in the full pathway
  • METHYLGALLATE-DEGRADATION-PWY, methylgallate degradation:
    • 2 reactions found over 6 reactions in the full pathway
  • GALLATE-DEGRADATION-I-PWY, gallate degradation II:
    • 1 reactions found over 5 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR106486
  • RHEA:
  • LIGAND-RXN:





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