Difference between revisions of "RXN-2762"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARGSUCCINLYA-RXN ARGSUCCINLYA-RXN] == * direction: ** reversible * common-name: ** argininosuccinat...")
(Created page with "Category:reaction == Reaction PYRIDOXKIN-RXN == * direction: ** left-to-right * common-name: ** pyridoxal kinase * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.35 ec-2...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARGSUCCINLYA-RXN ARGSUCCINLYA-RXN] ==
+
== Reaction PYRIDOXKIN-RXN ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** argininosuccinate lyase
+
** pyridoxal kinase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.3.2.1 ec-4.3.2.1]
+
** [http://enzyme.expasy.org/EC/2.7.1.35 ec-2.7.1.35]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[L-ARGININO-SUCCINATE]][c] '''<=>''' 1 [[ARG]][c] '''+''' 1 [[FUM]][c]
+
* 1 [[ATP]][c] '''+''' 1 [[PYRIDOXAL]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PYRIDOXAL_PHOSPHATE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ20639]]
+
* Gene: [[SJ14436]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ08289]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYN-PWY ARGSYN-PWY]
+
* [[PLPSAL-PWY]], pyridoxal 5'-phosphate salvage I:
−
** '''5''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-4983]], nitric oxide biosynthesis II (mammals): [http://metacyc.org/META/NEW-IMAGE?object=PWY-4983 PWY-4983]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7400 PWY-7400]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-4984]], urea cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4984 PWY-4984]
 
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYNBSUB-PWY ARGSYNBSUB-PWY]
+
* [[PWY-7204]], pyridoxal 5'-phosphate salvage II (plants):
 
** '''9''' reactions found over '''9''' reactions in the full pathway
 
** '''9''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-5154]], L-arginine biosynthesis III (via N-acetyl-L-citrulline): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5154 PWY-5154]
+
* [[PWY-7282]], 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis:
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''6''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24023 24023]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10225 10225]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01086 R01086]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00174 R00174]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P50987 P50987]
+
** [http://www.uniprot.org/uniprot/Q7M2L1 Q7M2L1]
−
** [http://www.uniprot.org/uniprot/Q46104 Q46104]
+
** [http://www.uniprot.org/uniprot/P44690 P44690]
−
** [http://www.uniprot.org/uniprot/P11447 P11447]
+
** [http://www.uniprot.org/uniprot/P77150 P77150]
−
** [http://www.uniprot.org/uniprot/Q9JVG7 Q9JVG7]
+
{{#set: direction=left-to-right}}
−
** [http://www.uniprot.org/uniprot/Q9CJ76 Q9CJ76]
+
{{#set: common-name=pyridoxal kinase}}
−
** [http://www.uniprot.org/uniprot/P44314 P44314]
+
{{#set: ec-number=ec-2.7.1.35}}
−
** [http://www.uniprot.org/uniprot/Q58201 Q58201]
+
{{#set: nb gene associated=2}}
−
** [http://www.uniprot.org/uniprot/P33110 P33110]
+
{{#set: nb pathway associated=3}}
−
** [http://www.uniprot.org/uniprot/Q01592 Q01592]
 
−
** [http://www.uniprot.org/uniprot/P40369 P40369]
 
−
** [http://www.uniprot.org/uniprot/P50988 P50988]
 
−
** [http://www.uniprot.org/uniprot/P73257 P73257]
 
−
** [http://www.uniprot.org/uniprot/P50514 P50514]
 
−
** [http://www.uniprot.org/uniprot/P04076 P04076]
 
−
** [http://www.uniprot.org/uniprot/P04424 P04424]
 
−
** [http://www.uniprot.org/uniprot/P20673 P20673]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=argininosuccinate lyase}}
 
−
{{#set: ec-number=ec-4.3.2.1}}
 
−
{{#set: nb gene associated=1}}
 
−
{{#set: nb pathway associated=6}}
 
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_nannochloropsis_salina}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana}}

Revision as of 20:44, 18 December 2020

Reaction PYRIDOXKIN-RXN

  • direction:
    • left-to-right
  • common-name:
    • pyridoxal kinase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PLPSAL-PWY, pyridoxal 5'-phosphate salvage I:
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7204, pyridoxal 5'-phosphate salvage II (plants):
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-7282, 4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis:
    • 6 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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