Difference between revisions of "RXN-3142"

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(Created page with "Category:reaction == Reaction PROLINE--TRNA-LIGASE-RXN == * direction: ** left-to-right * common-name: ** proline-trna ligase * ec-number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:reaction == Reaction RXN-8788 == * direction: ** left-to-right * common-name: ** bacteriochlorophyll a synthase * ec-number: ** [http://enzyme.expasy.org/EC/2.5.1...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction PROLINE--TRNA-LIGASE-RXN ==
+
== Reaction RXN-8788 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** proline-trna ligase
+
** bacteriochlorophyll a synthase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.15 ec-6.1.1.15]
+
** [http://enzyme.expasy.org/EC/2.5.1.133 ec-2.5.1.133]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[PRO]][c] '''+''' 1 [[PRO-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-PRO-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[CPD-9066]][c] '''+''' 1 [[GERANYLGERANYL-PP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-9088]][c] '''+''' 1 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ08366]]
+
* Gene: [[SJ07213]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ16508]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ16507]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging:
+
* [[PWY-5526]], bacteriochlorophyll a biosynthesis:
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''5''' reactions found over '''13''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14306 14306]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=49229 49229]
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03661 R03661]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/O51363 O51363]
 
−
** [http://www.uniprot.org/uniprot/O58734 O58734]
 
−
** [http://www.uniprot.org/uniprot/Q9ZMJ6 Q9ZMJ6]
 
−
** [http://www.uniprot.org/uniprot/P43830 P43830]
 
−
** [http://www.uniprot.org/uniprot/P47525 P47525]
 
−
** [http://www.uniprot.org/uniprot/O26708 O26708]
 
−
** [http://www.uniprot.org/uniprot/Q9JU09 Q9JU09]
 
−
** [http://www.uniprot.org/uniprot/Q58635 Q58635]
 
−
** [http://www.uniprot.org/uniprot/P56124 P56124]
 
−
** [http://www.uniprot.org/uniprot/O83195 O83195]
 
−
** [http://www.uniprot.org/uniprot/Q9Z851 Q9Z851]
 
−
** [http://www.uniprot.org/uniprot/O31755 O31755]
 
−
** [http://www.uniprot.org/uniprot/P36431 P36431]
 
−
** [http://www.uniprot.org/uniprot/Q9ZDE7 Q9ZDE7]
 
−
** [http://www.uniprot.org/uniprot/Q9PHX1 Q9PHX1]
 
−
** [http://www.uniprot.org/uniprot/Q9CDT4 Q9CDT4]
 
−
** [http://www.uniprot.org/uniprot/Q9WYY4 Q9WYY4]
 
−
** [http://www.uniprot.org/uniprot/P75382 P75382]
 
−
** [http://www.uniprot.org/uniprot/Q49090 Q49090]
 
−
** [http://www.uniprot.org/uniprot/P07814 P07814]
 
−
** [http://www.uniprot.org/uniprot/P16659 P16659]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=proline-trna ligase}}
+
{{#set: common-name=bacteriochlorophyll a synthase}}
−
{{#set: ec-number=ec-6.1.1.15}}
+
{{#set: ec-number=ec-2.5.1.133}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 11:22, 15 January 2021

Reaction RXN-8788

  • direction:
    • left-to-right
  • common-name:
    • bacteriochlorophyll a synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5526, bacteriochlorophyll a biosynthesis:
    • 5 reactions found over 13 reactions in the full pathway

Reconstruction information

External links





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