Difference between revisions of "RXN-3221"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7677 RXN-7677] == * direction: ** left-to-right * common-name: ** 71-hydroxychlorophyllide a mo...")
(Created page with "Category:reaction == Reaction HOLO-ACP-SYNTH-RXN == * direction: ** left-to-right * common-name: ** holo-[acyl-carrier-protein] synthase * ec-number: ** [http://enzyme.exp...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7677 RXN-7677] ==
+
== Reaction HOLO-ACP-SYNTH-RXN ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** 71-hydroxychlorophyllide a monooxygenase
+
** holo-[acyl-carrier-protein] synthase
−
** chlorophyllide a oxygenase [overall]
+
* ec-number:
−
** chlorophyllide b reductase
+
** [http://enzyme.expasy.org/EC/2.7.8.7 ec-2.7.8.7]
−
* synonymous:
 
−
** chlorophyll-b synthase
 
−
** cao
 
−
** chlorophyllide a oxygenase
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD-7015]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-19759]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[WATER]][c]
+
* 1 [[CO-A]][c] '''+''' 1 [[apo-ACP]][c] '''=>''' 1 [[3-5-ADP]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ00669]]
−
* Gene: [[SJ07178]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ17313]]
+
* Gene: [[SJ19702]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ22311]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ22309]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ04336]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ15075]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08869]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ16078]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ00278]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5068]], chlorophyll cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5068 PWY-5068]
+
* [[PWY-6012]], acyl carrier protein metabolism:
−
** '''4''' reactions found over '''7''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6012-1]], acyl carrier protein activation:
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
Line 59: Line 30:
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22137 22137]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12069 12069]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R08204 R08204]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01625 R01625]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/Q9PMP8 Q9PMP8]
 +
** [http://www.uniprot.org/uniprot/P24224 P24224]
 +
** [http://www.uniprot.org/uniprot/O84102 O84102]
 +
** [http://www.uniprot.org/uniprot/Q9RQW2 Q9RQW2]
 +
** [http://www.uniprot.org/uniprot/O83800 O83800]
 +
** [http://www.uniprot.org/uniprot/Q9ZCX5 Q9ZCX5]
 +
** [http://www.uniprot.org/uniprot/Q9ZL36 Q9ZL36]
 +
** [http://www.uniprot.org/uniprot/O25488 O25488]
 +
** [http://www.uniprot.org/uniprot/P96618 P96618]
 +
** [http://www.uniprot.org/uniprot/O66995 O66995]
 +
** [http://www.uniprot.org/uniprot/P0A4W8 P0A4W8]
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=chlorophyllide a oxygenase [overall]|71-hydroxychlorophyllide a monooxygenase|chlorophyllide b reductase}}
+
{{#set: common-name=holo-[acyl-carrier-protein] synthase}}
−
{{#set: synonymous=chlorophyll-b synthase|cao|chlorophyllide a oxygenase}}
+
{{#set: ec-number=ec-2.7.8.7}}
−
{{#set: nb gene associated=9}}
+
{{#set: nb gene associated=2}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=2}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 20:39, 18 December 2020

Reaction HOLO-ACP-SYNTH-RXN

  • direction:
    • left-to-right
  • common-name:
    • holo-[acyl-carrier-protein] synthase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6012, acyl carrier protein metabolism:
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6012-1, acyl carrier protein activation:
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links

Property "Common-name" (as page type) with input value "holo-[acyl-carrier-protein] synthase" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.




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