Difference between revisions of "RXN-3221"

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(Created page with "Category:reaction == Reaction HOLO-ACP-SYNTH-RXN == * direction: ** left-to-right * common-name: ** holo-[acyl-carrier-protein] synthase * ec-number: ** [http://enzyme.exp...")
(Created page with "Category:reaction == Reaction HACD1h == * direction: ** reversible * common-name: ** 3-hydroxyacyl-coa dehydrogenase (c4:0) == Reaction formula == * 1.0 NAD[h] '''+'''...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction HOLO-ACP-SYNTH-RXN ==
+
== Reaction HACD1h ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** holo-[acyl-carrier-protein] synthase
+
** 3-hydroxyacyl-coa dehydrogenase (c4:0)
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/2.7.8.7 ec-2.7.8.7]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CO-A]][c] '''+''' 1 [[apo-ACP]][c] '''=>''' 1 [[3-5-ADP]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[PROTON]][c]
+
* 1.0 [[NAD]][h] '''+''' 1.0 [[S-3-HYDROXYBUTANOYL-COA]][h] '''<=>''' 1.0 [[ACETOACETYL-COA]][h] '''+''' 1.0 [[NADH]][h] '''+''' 1.0 [[PROTON]][h]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ00669]]
+
* Gene: [[SJ03584]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ19702]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-6012]], acyl carrier protein metabolism:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-6012-1]], acyl carrier protein activation:
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=reversible}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12069 12069]
+
{{#set: common-name=3-hydroxyacyl-coa dehydrogenase (c4:0)}}
−
* LIGAND-RXN:
+
{{#set: nb gene associated=1}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01625 R01625]
+
{{#set: nb pathway associated=0}}
−
* UNIPROT:
+
{{#set: reconstruction category=orthology}}
−
** [http://www.uniprot.org/uniprot/Q9PMP8 Q9PMP8]
+
{{#set: reconstruction tool=pantograph}}
−
** [http://www.uniprot.org/uniprot/P24224 P24224]
 
−
** [http://www.uniprot.org/uniprot/O84102 O84102]
 
−
** [http://www.uniprot.org/uniprot/Q9RQW2 Q9RQW2]
 
−
** [http://www.uniprot.org/uniprot/O83800 O83800]
 
−
** [http://www.uniprot.org/uniprot/Q9ZCX5 Q9ZCX5]
 
−
** [http://www.uniprot.org/uniprot/Q9ZL36 Q9ZL36]
 
−
** [http://www.uniprot.org/uniprot/O25488 O25488]
 
−
** [http://www.uniprot.org/uniprot/P96618 P96618]
 
−
** [http://www.uniprot.org/uniprot/O66995 O66995]
 
−
** [http://www.uniprot.org/uniprot/P0A4W8 P0A4W8]
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=holo-[acyl-carrier-protein] synthase}}
 
−
{{#set: ec-number=ec-2.7.8.7}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=2}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Revision as of 15:01, 5 January 2021

Reaction HACD1h

  • direction:
    • reversible
  • common-name:
    • 3-hydroxyacyl-coa dehydrogenase (c4:0)

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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