Difference between revisions of "RXN-37"

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(Created page with "Category:reaction == Reaction RXN-12490 == * direction: ** left-to-right * common-name: ** 3-hydroxyacyl-coa dehydrogenase ** (s)-3-hydroxydecanoyl-coa dehydrogenase * ec-...")
(Created page with "Category:reaction == Reaction PROTOHEMEFERROCHELAT-RXN == * direction: ** reversible * common-name: ** ferrochelatase * ec-number: ** [http://enzyme.expasy.org/EC/4.99.1.1...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-12490 ==
+
== Reaction PROTOHEMEFERROCHELAT-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** 3-hydroxyacyl-coa dehydrogenase
+
** ferrochelatase
−
** (s)-3-hydroxydecanoyl-coa dehydrogenase
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.35 ec-1.1.1.35]
+
** [http://enzyme.expasy.org/EC/4.99.1.1 ec-4.99.1.1]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[CPD0-2244]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[CPD0-2123]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[PROTOHEME]][c] '''+''' 2 [[PROTON]][c] '''<=>''' 1 [[FE+2]][c] '''+''' 1 [[PROTOPORPHYRIN_IX]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ19310]]
−
* Gene: [[SJ01444]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ03584]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ16180]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ16470]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ21390]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ07211]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ17348]]
+
* Gene: [[SJ19170]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ06127]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7094]], fatty acid salvage:
+
* [[PWY0-1415]], superpathway of heme b biosynthesis from uroporphyrinogen-III:
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''5''' reactions found over '''4''' reactions in the full pathway
 +
* [[HEMESYN2-PWY]], heme b biosynthesis II (oxygen-independent):
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[HEME-BIOSYNTHESIS-II]], heme b biosynthesis I (aerobic):
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31188 31188]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22584 22584]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04743 R04743]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00310 R00310]
−
{{#set: direction=left-to-right}}
+
* UNIPROT:
−
{{#set: common-name=3-hydroxyacyl-coa dehydrogenase|(s)-3-hydroxydecanoyl-coa dehydrogenase}}
+
** [http://www.uniprot.org/uniprot/P22830 P22830]
−
{{#set: ec-number=ec-1.1.1.35}}
+
** [http://www.uniprot.org/uniprot/P22315 P22315]
−
{{#set: nb gene associated=8}}
+
** [http://www.uniprot.org/uniprot/P28602 P28602]
−
{{#set: nb pathway associated=1}}
+
** [http://www.uniprot.org/uniprot/Q05338 Q05338]
 +
** [http://www.uniprot.org/uniprot/P42043 P42043]
 +
** [http://www.uniprot.org/uniprot/P23871 P23871]
 +
** [http://www.uniprot.org/uniprot/P32396 P32396]
 +
** [http://www.uniprot.org/uniprot/Q9CFB4 Q9CFB4]
 +
** [http://www.uniprot.org/uniprot/P56107 P56107]
 +
** [http://www.uniprot.org/uniprot/O67083 O67083]
 +
** [http://www.uniprot.org/uniprot/Q9PI08 Q9PI08]
 +
** [http://www.uniprot.org/uniprot/Q9JVA5 Q9JVA5]
 +
** [http://www.uniprot.org/uniprot/P22600 P22600]
 +
** [http://www.uniprot.org/uniprot/P43868 P43868]
 +
** [http://www.uniprot.org/uniprot/P16622 P16622]
 +
** [http://www.uniprot.org/uniprot/Q59735 Q59735]
 +
** [http://www.uniprot.org/uniprot/P43413 P43413]
 +
** [http://www.uniprot.org/uniprot/P54225 P54225]
 +
** [http://www.uniprot.org/uniprot/P42045 P42045]
 +
** [http://www.uniprot.org/uniprot/O64391 O64391]
 +
** [http://www.uniprot.org/uniprot/P42044 P42044]
 +
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=ferrochelatase}}
 +
{{#set: ec-number=ec-4.99.1.1}}
 +
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=3}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:32, 5 January 2021

Reaction PROTOHEMEFERROCHELAT-RXN

  • direction:
    • reversible
  • common-name:
    • ferrochelatase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY0-1415, superpathway of heme b biosynthesis from uroporphyrinogen-III:
    • 5 reactions found over 4 reactions in the full pathway
  • HEMESYN2-PWY, heme b biosynthesis II (oxygen-independent):
    • 3 reactions found over 4 reactions in the full pathway
  • HEME-BIOSYNTHESIS-II, heme b biosynthesis I (aerobic):
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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