Difference between revisions of "RXN-3701"

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(Created page with "Category:reaction == Reaction DETHIOBIOTIN-SYN-RXN == * direction: ** left-to-right * common-name: ** dethiobiotin synthetase * ec-number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:reaction == Reaction RXN-4313-CPD-4205/WATER//CPD-16551/CPD-4209.35. == * direction: ** left-to-right == Reaction formula == * 1.0 CPD-4205[c] '''+''' 1.0 W...")
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction DETHIOBIOTIN-SYN-RXN ==
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== Reaction RXN-4313-CPD-4205/WATER//CPD-16551/CPD-4209.35. ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
−
* common-name:
 
−
** dethiobiotin synthetase
 
−
* ec-number:
 
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** [http://enzyme.expasy.org/EC/6.3.3.3 ec-6.3.3.3]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[DIAMINONONANOATE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[DETHIOBIOTIN]][c] '''+''' 3 [[PROTON]][c] '''+''' 1 [[Pi]][c]
+
* 1.0 [[CPD-4205]][c] '''+''' 1.0 [[WATER]][c] '''=>''' 1.0 [[CPD-16551]][c] '''+''' 1.0 [[CPD-4209]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ14599]]
 
−
** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY0-1507]], biotin biosynthesis from 8-amino-7-oxononanoate I:
 
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** '''3''' reactions found over '''3''' reactions in the full pathway
 
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* [[PWY-7380]], biotin biosynthesis from 8-amino-7-oxononanoate II:
 
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** '''2''' reactions found over '''3''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15805 15805]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R03182 R03182]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/Q9JV95 Q9JV95]
 
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** [http://www.uniprot.org/uniprot/Q9PIJ1 Q9PIJ1]
 
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** [http://www.uniprot.org/uniprot/P46397 P46397]
 
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** [http://www.uniprot.org/uniprot/P22818 P22818]
 
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** [http://www.uniprot.org/uniprot/P13000 P13000]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
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{{#set: common-name=dethiobiotin synthetase}}
+
{{#set: nb gene associated=0}}
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{{#set: ec-number=ec-6.3.3.3}}
+
{{#set: nb pathway associated=0}}
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{{#set: nb gene associated=1}}
+
{{#set: reconstruction category=gap-filling}}
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{{#set: nb pathway associated=2}}
+
{{#set: reconstruction tool=meneco}}
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{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
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{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 08:33, 15 March 2021

Reaction RXN-4313-CPD-4205/WATER//CPD-16551/CPD-4209.35.

  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-3701&oldid=127448"