Difference between revisions of "RXN-3701"

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(Created page with "Category:reaction == Reaction RXN-7922 == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.14.11.9 ec-1.14.11.9] == Reaction formula == * 1 2...")
(Created page with "Category:reaction == Reaction GCVP-RXN == * direction: ** reversible * common-name: ** glycine decarboxylase * ec-number: ** [http://enzyme.expasy.org/EC/1.4.4.2 ec-1.4.4....")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN-7922 ==
+
== Reaction GCVP-RXN ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 +
* common-name:
 +
** glycine decarboxylase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.14.11.9 ec-1.14.11.9]
+
** [http://enzyme.expasy.org/EC/1.4.4.2 ec-1.4.4.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CPD-7214]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-7087]][c] '''+''' 1 [[SUC]][c]
+
* 1 [[GLY]][c] '''+''' 1 [[PROTEIN-LIPOYLLYSINE]][c] '''+''' 1 [[PROTON]][c] '''<=>''' 1 [[AMINOMETHYLDIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* Gene: [[SJ08557]]
−
* Gene: [[SJ07557]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ14670]]
+
* Gene: [[SJ06358]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ14677]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ14675]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ14672]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ08018]]
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
</div>
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-5152]], leucodelphinidin biosynthesis:
+
* [[GLYCLEAV-PWY]], glycine cleavage:
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[GLYCINE-SYN2-PWY]], glycine biosynthesis II:
 +
** '''2''' reactions found over '''1''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24307 24307]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05039 R05039]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03425 R03425]
−
{{#set: direction=left-to-right}}
+
* UNIPROT:
−
{{#set: ec-number=ec-1.14.11.9}}
+
** [http://www.uniprot.org/uniprot/P26969 P26969]
−
{{#set: nb gene associated=6}}
+
** [http://www.uniprot.org/uniprot/Q9UXT1 Q9UXT1]
−
{{#set: nb pathway associated=1}}
+
** [http://www.uniprot.org/uniprot/Q9JT86 Q9JT86]
−
{{#set: reconstruction category=orthology}}
+
** [http://www.uniprot.org/uniprot/Q9UXT0 Q9UXT0]
−
{{#set: reconstruction tool=pantograph}}
+
** [http://www.uniprot.org/uniprot/P23378 P23378]
 +
** [http://www.uniprot.org/uniprot/P33195 P33195]
 +
** [http://www.uniprot.org/uniprot/O80988 O80988]
 +
** [http://www.uniprot.org/uniprot/Q94B78 Q94B78]
 +
** [http://www.uniprot.org/uniprot/O32915 O32915]
 +
** [http://www.uniprot.org/uniprot/O22575 O22575]
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=glycine decarboxylase}}
 +
{{#set: ec-number=ec-1.4.4.2}}
 +
{{#set: nb gene associated=2}}
 +
{{#set: nb pathway associated=2}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 15:01, 5 January 2021

Reaction GCVP-RXN

  • direction:
    • reversible
  • common-name:
    • glycine decarboxylase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • GLYCLEAV-PWY, glycine cleavage:
    • 3 reactions found over 3 reactions in the full pathway
  • GLYCINE-SYN2-PWY, glycine biosynthesis II:
    • 2 reactions found over 1 reactions in the full pathway

Reconstruction information

External links





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