Difference between revisions of "RXN-4144"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMDECARB-RXN DIAMINOPIMDECARB-RXN] == * direction: ** left-to-right * common-name: ** diami...")
(Created page with "Category:reaction == Reaction RXN-4144 == * direction: ** left-to-right * common-name: ** 4α-methyl-5α-ergosta-8,14,24(28)-trien-3β-ol δ14 reductase...")
 
(7 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMDECARB-RXN DIAMINOPIMDECARB-RXN] ==
+
== Reaction RXN-4144 ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** diaminopimelate decarboxylase
+
** 4α-methyl-5α-ergosta-8,14,24(28)-trien-3β-ol δ14 reductase
 +
** 4α-methyl-5α-ergosta-8,14,24(28)-dien-3β-ol δ14-sterol reductase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/4.1.1.20 ec-4.1.1.20]
+
** [http://enzyme.expasy.org/EC/1.3.1.70 ec-1.3.1.70]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[MESO-DIAMINOPIMELATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[LYS]][c]
+
* 1 [[ALPHA-METHYL-5-ALPHA-ERGOSTA]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CPD-4081]][c] '''+''' 1 [[NADP]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ09103]]
+
* Gene: [[SJ12265]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ00674]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21359]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 28: Line 19:
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-2942]], L-lysine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2942 PWY-2942]
+
* [[PWY-2541]], phytosterol biosynthesis (plants):
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''11''' reactions found over '''35''' reactions in the full pathway
−
* [[PWY-5097]], L-lysine biosynthesis VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5097 PWY-5097]
 
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
−
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-2941]], L-lysine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2941 PWY-2941]
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* METANETX-RXN : MNXR101468
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15102 15102]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00451 R00451]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07483 R07483]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P19572 P19572]
 
−
** [http://www.uniprot.org/uniprot/P0A5M4 P0A5M4]
 
−
** [http://www.uniprot.org/uniprot/P44316 P44316]
 
−
** [http://www.uniprot.org/uniprot/P56129 P56129]
 
−
** [http://www.uniprot.org/uniprot/O67262 O67262]
 
−
** [http://www.uniprot.org/uniprot/Q9JWA6 Q9JWA6]
 
−
** [http://www.uniprot.org/uniprot/Q9CG26 Q9CG26]
 
−
** [http://www.uniprot.org/uniprot/P00861 P00861]
 
−
** [http://www.uniprot.org/uniprot/O27390 O27390]
 
−
** [http://www.uniprot.org/uniprot/Q9PII5 Q9PII5]
 
−
** [http://www.uniprot.org/uniprot/Q58497 Q58497]
 
−
** [http://www.uniprot.org/uniprot/O29458 O29458]
 
−
** [http://www.uniprot.org/uniprot/P41023 P41023]
 
−
** [http://www.uniprot.org/uniprot/P23630 P23630]
 
−
** [http://www.uniprot.org/uniprot/P09890 P09890]
 
−
** [http://www.uniprot.org/uniprot/Q55484 Q55484]
 
−
** [http://www.uniprot.org/uniprot/O05321 O05321]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=diaminopimelate decarboxylase}}
+
{{#set: common-name=4&alpha;-methyl-5&alpha;-ergosta-8,14,24(28)-dien-3&beta;-ol &delta;14-sterol reductase|4&alpha;-methyl-5&alpha;-ergosta-8,14,24(28)-trien-3&beta;-ol &delta;14 reductase}}
−
{{#set: ec-number=ec-4.1.1.20}}
+
{{#set: ec-number=ec-1.3.1.70}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools|pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_arabidopsis_thaliana}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Latest revision as of 11:19, 18 March 2021

Reaction RXN-4144

  • direction:
    • left-to-right
  • common-name:
    • 4α-methyl-5α-ergosta-8,14,24(28)-trien-3β-ol δ14 reductase
    • 4α-methyl-5α-ergosta-8,14,24(28)-dien-3β-ol δ14-sterol reductase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-2541, phytosterol biosynthesis (plants):
    • 11 reactions found over 35 reactions in the full pathway

Reconstruction information

External links

  • METANETX-RXN : MNXR101468
  • LIGAND-RXN:





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