Difference between revisions of "RXN-4181-CPD-4101/DIMETHYL-GLYCINE//EPISTEROL/BETAINE.45."

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(Created page with "Category:reaction == Reaction DXPREDISOM-RXN == * direction: ** reversible * common-name: ** 1-deoxy-d-xylulose 5-phosphate reductoisomerase * ec-number: ** [http://enzyme...")
(Created page with "Category:reaction == Reaction RXN-4181-CPD-4101/DIMETHYL-GLYCINE//EPISTEROL/BETAINE.45. == * direction: ** reversible == Reaction formula == * 1.0 CPD-4101[c] '''+'''...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
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== Reaction DXPREDISOM-RXN ==
+
== Reaction RXN-4181-CPD-4101/DIMETHYL-GLYCINE//EPISTEROL/BETAINE.45. ==
 
* direction:
 
* direction:
 
** reversible
 
** reversible
−
* common-name:
 
−
** 1-deoxy-d-xylulose 5-phosphate reductoisomerase
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/1.1.1.267 ec-1.1.1.267]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[2-C-METHYL-D-ERYTHRITOL-4-PHOSPHATE]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[DEOXYXYLULOSE-5P]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c]
+
* 1.0 [[CPD-4101]][c] '''+''' 1.0 [[DIMETHYL-GLYCINE]][c] '''<=>''' 1.0 [[BETAINE]][c] '''+''' 1.0 [[EPISTEROL]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ11908]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7560]], methylerythritol phosphate pathway II:
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I:
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
* METANETX-RXN : MNXR97830
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13720 13720]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R05688 R05688]
 
 
{{#set: direction=reversible}}
 
{{#set: direction=reversible}}
−
{{#set: common-name=1-deoxy-d-xylulose 5-phosphate reductoisomerase}}
+
{{#set: nb gene associated=0}}
−
{{#set: ec-number=ec-1.1.1.267}}
+
{{#set: nb pathway associated=0}}
−
{{#set: nb gene associated=1}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: nb pathway associated=2}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}
 

Latest revision as of 11:20, 18 March 2021

Reaction RXN-4181-CPD-4101/DIMETHYL-GLYCINE//EPISTEROL/BETAINE.45.

  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=RXN-4181-CPD-4101/DIMETHYL-GLYCINE//EPISTEROL/BETAINE.45.&oldid=141015"