Difference between revisions of "RXN-4208-CPD-4124/DIMETHYL-GLYCINE//CPD-4125/BETAINE.44."

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(Created page with "Category:reaction == Reaction RXN3DJ-25 == * direction: ** left-to-right * common-name: ** sphingosine-1-phosphate phosphatase == Reaction formula == * 1 CPD3DJ-11366[...")
(Created page with "Category:reaction == Reaction RXN-4208-CPD-4124/DIMETHYL-GLYCINE//CPD-4125/BETAINE.44. == * direction: ** reversible == Reaction formula == * 1.0 CPD-4124[c] '''+''' 1...")
 
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction RXN3DJ-25 ==
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== Reaction RXN-4208-CPD-4124/DIMETHYL-GLYCINE//CPD-4125/BETAINE.44. ==
 
* direction:
 
* direction:
−
** left-to-right
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** reversible
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* common-name:
 
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** sphingosine-1-phosphate phosphatase
 
 
== Reaction formula ==
 
== Reaction formula ==
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* 1 [[CPD3DJ-11366]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[SPHINGOSINE]][c]
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* 1.0 [[CPD-4124]][c] '''+''' 1.0 [[DIMETHYL-GLYCINE]][c] '''<=>''' 1.0 [[BETAINE]][c] '''+''' 1.0 [[CPD-4125]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ19405]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
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* [[PWY3DJ-11470]], sphingosine and sphingosine-1-phosphate metabolism:
 
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** '''3''' reactions found over '''10''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: direction=reversible}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27519 27519]
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{{#set: nb gene associated=0}}
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* LIGAND-RXN:
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{{#set: nb pathway associated=0}}
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** [http://www.genome.jp/dbget-bin/www_bget?R06521 R06521]
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{{#set: reconstruction category=gap-filling}}
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{{#set: direction=left-to-right}}
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{{#set: reconstruction tool=meneco}}
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{{#set: common-name=sphingosine-1-phosphate phosphatase}}
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{{#set: reconstruction comment=added for gapfilling}}
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{{#set: nb gene associated=1}}
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{{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: nb pathway associated=1}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=pathwaytools|pantograph}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Latest revision as of 11:24, 18 March 2021

Reaction RXN-4208-CPD-4124/DIMETHYL-GLYCINE//CPD-4125/BETAINE.44.

  • direction:
    • reversible

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

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